Pairwise Alignments

Query, 493 a.a., Transcription termination protein NusA from Pseudomonas fluorescens FW300-N2E2

Subject, 443 a.a., transcription elongation factor NusA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  290 bits (742), Expect = 7e-83
 Identities = 164/439 (37%), Positives = 269/439 (61%), Gaps = 15/439 (3%)

Query: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFR 60
           MS E+   ++ +S +KG+  +++ + LE A+ T+  ++F DE+D  V  N  TG  + ++
Sbjct: 1   MSLELKKAIDQISKDKGLDRDMLIDTLEEAVRTSVARKFGDEMDAEVSYNDETGEIDVYQ 60

Query: 61  RWTVVEEADLDDPAIETWPSKVAETH-PGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQK 119
              VV++ +  +  I     + A TH P  ++ D +  +++  + GRIAAQ+AKQVI+Q+
Sbjct: 61  FKIVVKKVENPNSEISL---EDARTHDPSVQLDDEMGFRVKIEDLGRIAAQSAKQVIIQR 117

Query: 120 VREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGV 179
           +R+AE+  + + Y++R GEI+SG +++  +   I++LG   EALL +E+ I RE ++ G 
Sbjct: 118 MRDAEQEIIYEEYKDRRGEIVSGIIQRRDKAGWIINLGRT-EALLPKEEQIPREHYKRGD 176

Query: 180 RLRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIA 239
           R++A+L ++R E RGPQ+I+SR   + +  LFR EVPE+ +G +++M  SRDPGSRAK A
Sbjct: 177 RVQAILIDVRKEGRGPQVIVSRAHRDYMAALFRREVPEVDDGTVQIMGVSRDPGSRAKAA 236

Query: 240 VRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAII 299
           V S+D+ +DP GAC+G+RGSR+Q +  E+ GER+DIV+W  + A +  NA+SPA ++ I+
Sbjct: 237 VMSRDRDVDPVGACVGIRGSRIQNIVQEMRGERIDIVVWSPDIATYARNALSPAVISRIV 296

Query: 300 VDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILR 359
           VDE+ + +++ V  D L  AIGR GQNV+LA++L GW +++ TE+     +  E   I R
Sbjct: 297 VDEEENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYTET-----RYNEANAIGR 351

Query: 360 NFIEELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAK---DRL 416
              +   V E   +  +  GF S+E +     EE+ +  G     + +LRA       + 
Sbjct: 352 GLEQIASVAEISIEQFIAAGFQSIERLREADDEELASALGLAPGKIADLRAAINFLAPQA 411

Query: 417 LTKAIATEEKLADAHPAED 435
              A AT E   DA PA +
Sbjct: 412 QDDADATAE--PDAEPAPE 428