Pairwise Alignments

Query, 493 a.a., Transcription termination protein NusA from Pseudomonas fluorescens FW300-N2E2

Subject, 497 a.a., transcription elongation factor NusA from Marinobacter adhaerens HP15

 Score =  662 bits (1708), Expect = 0.0
 Identities = 341/494 (69%), Positives = 406/494 (82%), Gaps = 1/494 (0%)

Query: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDE-VDLRVEINRHTGAYETF 59
           MSKE+LLVVESVSNEKGV  +VIFEA+ELALATA KKRFEDE  D+RV I+R TG YETF
Sbjct: 1   MSKEILLVVESVSNEKGVEKDVIFEAIELALATAAKKRFEDEEADIRVSIDRKTGEYETF 60

Query: 60  RRWTVVEEADLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQK 119
           RRW VV+   +     E    +  E  P  K GD+ EEKIES  FGRI AQ AKQ+I QK
Sbjct: 61  RRWLVVDNDAVPALGTELTLQEAEEIDPALKPGDIHEEKIESEAFGRIGAQAAKQIIFQK 120

Query: 120 VREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGV 179
           VREAER ++VD+YR+R+GE++SGTVKKVTRDNVIVDLG NAEALL RE +I RETFR+G 
Sbjct: 121 VREAERTKIVDSYRDRVGELVSGTVKKVTRDNVIVDLGANAEALLPREFLIPRETFRMGD 180

Query: 180 RLRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIA 239
           R+R+LL EIRT++RGPQLILSRT+P+MLIELFRIEVPEIAE LIE+  A+RDPGSRAKIA
Sbjct: 181 RVRSLLLEIRTDHRGPQLILSRTSPQMLIELFRIEVPEIAEDLIEIRGAARDPGSRAKIA 240

Query: 240 VRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAII 299
           V++ D+RIDP GAC+GMRGSRVQAVS ELGGERVDIVLWDDNPAQ VINAM+PAEVA+I+
Sbjct: 241 VKTNDRRIDPVGACVGMRGSRVQAVSNELGGERVDIVLWDDNPAQLVINAMAPAEVASIV 300

Query: 300 VDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILR 359
           +DED H M++AV  DNLAQAIGR GQNVRLA+ LTGWTLNVMTE +   +Q+ E   ++ 
Sbjct: 301 MDEDRHTMEVAVAEDNLAQAIGRNGQNVRLATDLTGWTLNVMTEEEAGERQEQEYSRLVE 360

Query: 360 NFIEELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLTK 419
           +F   L+VDEE A VL++EGFTS+EE+AYVP+EEML I+GFDEE V ELR RAKD LL +
Sbjct: 361 HFTGNLDVDEEFAGVLIEEGFTSIEEVAYVPMEEMLAIEGFDEETVTELRRRAKDVLLNQ 420

Query: 420 AIATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDR 479
           A+A+EE L  A PAEDLL ++GMD+ LA +LA  GV T EDLAEQS+ DLL+I+G+D++R
Sbjct: 421 ALASEEALEGAEPAEDLLGMDGMDRSLAFKLAGMGVRTMEDLAEQSVGDLLEIEGMDEER 480

Query: 480 AGKLIMAARAHWFE 493
           AG+LIM ARA WFE
Sbjct: 481 AGQLIMTARAPWFE 494