Pairwise Alignments

Query, 493 a.a., Transcription termination protein NusA from Pseudomonas fluorescens FW300-N2E2

Subject, 544 a.a., NusA antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  414 bits (1064), Expect = e-120
 Identities = 220/459 (47%), Positives = 311/459 (67%), Gaps = 1/459 (0%)

Query: 4   EVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63
           E+L   E+V+ EK +   ++ EA+E +LA A K R+  E+D+RV I+R TG     R  T
Sbjct: 10  ELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVSIDRKTGVATFTRVRT 69

Query: 64  VVEEADLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123
           VVE+ +L++   E    +        KVGD + +++  +E GRIAAQ+AKQVI+QKVREA
Sbjct: 70  VVEDEELENYQAELTVEQAKPYLDDPKVGDTIVDQVPPVEMGRIAAQSAKQVILQKVREA 129

Query: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183
           ER +  + +++R G II+G VK+    NVIVD+G   E +L R + I RE++R   R+R 
Sbjct: 130 ERDRQYEEFKDRAGTIINGVVKREEYGNVIVDIGRG-EGVLRRNEKIGRESYRPNDRIRC 188

Query: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
            +K++R E RGPQ+ LSRTAPE + ELF++EVPEI +G+IE+ A +RDPGSRAKIAV S 
Sbjct: 189 YIKDVRREVRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISY 248

Query: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
           D  IDP GAC+GMRGSRVQAV  EL GE++DI+ W+++   F++NA+ PAEV+ +++DED
Sbjct: 249 DGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSKVVLDED 308

Query: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
           A  +++ V  + L+ AIGR GQNVRLASQLTG  +++MTE+    ++QAE  +    F+E
Sbjct: 309 AERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEFAERTNMFVE 368

Query: 364 ELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLTKAIAT 423
            L+VDE LAQ+LV EGFT+LEE+AYV  EE+L IDGFDE+   EL+ RA++ L  +A   
Sbjct: 369 ALDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAREFLEEQAKKA 428

Query: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLA 462
            E+  +    + L+  EG+   +   LA  GV T ED A
Sbjct: 429 LERAREMGVEDSLVEFEGLTPQMLEALAADGVKTLEDFA 467