Pairwise Alignments

Query, 493 a.a., Transcription termination protein NusA from Pseudomonas fluorescens FW300-N2E2

Subject, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella sp. ANA-3

 Score =  619 bits (1597), Expect = 0.0
 Identities = 318/495 (64%), Positives = 399/495 (80%), Gaps = 3/495 (0%)

Query: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFR 60
           M+KE+LLV E+VSNEK VP   IFEALE ALATATKK++E ++D+RV I+R TGAYETFR
Sbjct: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVSIDRKTGAYETFR 60

Query: 61  RWTVVEE--ADLDDPAIETWPSKVAETHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQ 118
           RW V+++    L++P  E         +P  + GD +E++IES+ F RI  QTAKQVIVQ
Sbjct: 61  RWMVIDDNGVALENPYREITLEAARYENPEIQPGDYIEDQIESVAFDRITTQTAKQVIVQ 120

Query: 119 KVREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVG 178
           KVREAERAQVV+ ++++ GE+I+G VKK TR++V+VDLGNNA+ +L RED+ISRE+FR G
Sbjct: 121 KVREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPG 180

Query: 179 VRLRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKI 238
            R+RALL  +R E RG QL L+RT P+MLIELFR+EVPEIA+ LIEVM A+RDPG+RAKI
Sbjct: 181 DRVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKI 240

Query: 239 AVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAI 298
           AV+S D+RIDP GAC+GMRG+RVQAVS ELGGERVDIVLWDDNPAQ+VINAM+PA+VA+I
Sbjct: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASI 300

Query: 299 IVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDIL 358
           IVDED H+MDIAV A++LAQAIGR GQNVRLA+QLTGW LNVMT  D+  K QAE+  + 
Sbjct: 301 IVDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVK 360

Query: 359 RNFIEELEVDEELAQVLVDEGFTSLEEIAYVPVEEMLNIDGFDEEIVNELRARAKDRLLT 418
             FI  L+VDE+ AQVL DEGFTSLEE+AYVPV E+L IDGFDE+IV  LR RAK  + T
Sbjct: 361 SLFINALDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAIST 420

Query: 419 KAIATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDD 478
           +A+ATEE L    P+E+LL+LEG+++ LA  LA +G++T EDLAEQ IDDL++I+ + ++
Sbjct: 421 RALATEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEE 480

Query: 479 RAGKLIMAAR-AHWF 492
           +AG LIMAAR   WF
Sbjct: 481 KAGALIMAARNICWF 495