Pairwise Alignments

Query, 332 a.a., Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) from Pseudomonas fluorescens FW300-N2E2

Subject, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

 Score =  201 bits (510), Expect = 3e-56
 Identities = 131/339 (38%), Positives = 183/339 (53%), Gaps = 18/339 (5%)

Query: 5   SEVLLRQAELFQGS-VLLAGLPADDLLGRLP-EAHGWC-------WHAGDQAALDARFPE 55
           SE+ LRQ + F    VL+AG   D    R P E   +C        H G  + L A +PE
Sbjct: 8   SEIALRQLDYFADKHVLVAGEVED----RFPIELRQYCASVSVFTTHYGYYSQLKA-YPE 62

Query: 56  RS-HFGVTVP-ERGFDTAVVFLPKAKDLTDYILNAVAARLA-GREVYLVGEKRSGIEGAS 112
            + +FG  +  +   D  +++ PKAK   +Y+L  + A+L  G E+ +VGE RSG++   
Sbjct: 63  ITRYFGEQLTADLNADLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIE 122

Query: 113 KQLNPFGKPRKLDSARHCQLWQVTVANAPEATPLESLAQTYELPLAEGPLKVISLPGVFS 172
           K    +G   K DSAR C  +     + P A  +E   ++Y +      L + SLPGVFS
Sbjct: 123 KMFAAYGPIHKYDSARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGVFS 182

Query: 173 HGRLDRGSALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNTVTLLDVDAFAAASSR 232
           HG  D GS LLL+ L  L SG ++D G GAGVLG  + +  PH  + + D+ A A  SS+
Sbjct: 183 HGEFDLGSRLLLDTLPPL-SGKVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSSQ 241

Query: 233 LTLAANGLEAEVLTGDGIDAAPMGLSAILSNPPFHVGVHTDYHATENLLRKAAKHLKNGG 292
            TL AN L   V   D         + I++NPPFH G+ T Y ATE LL ++  HL +GG
Sbjct: 242 ETLVANQLHGHVYPSDMFSDTGHHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGG 301

Query: 293 ELRLVANSFLKYQPLIEEHLGVCAIKAEGQGFRIYRAKR 331
            + +VANSFLKY P++E+  G C I A+   F IY AK+
Sbjct: 302 SIWVVANSFLKYPPILEQAFGHCDIAAKTNKFAIYHAKK 340