Pairwise Alignments

Query, 332 a.a., Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) from Pseudomonas fluorescens FW300-N2E2

Subject, 342 a.a., rRNA (guanine-N(2)-)-methyltransferase (RefSeq) from Shewanella loihica PV-4

 Score =  192 bits (487), Expect = 1e-53
 Identities = 127/341 (37%), Positives = 180/341 (52%), Gaps = 19/341 (5%)

Query: 5   SEVLLRQAELFQG-SVLLAGLPADDLLGRLPEAHGWCWHAGDQAALDARFPER------- 56
           S+V+LR  ELF+  +VLL     D L   L E            ALD    +R       
Sbjct: 6   SQVVLRNIELFESKNVLLINHECDLLATALLEDAAKV----TTLALDFNHFQRIKSHENA 61

Query: 57  ---SHFGVTVPE-RGFDTAVVFLPKAKDLTDYILNAVAARLA-GREVYLVGEKRSGIEGA 111
               HFG  +P  + FD  V+F PK+K L  Y+LN     L  G E+ +VGEK+ GI   
Sbjct: 62  RLQCHFGHQLPSTQTFDAVVLFYPKSKSLAPYLLNLAGRHLIPGGELVIVGEKKGGIRSI 121

Query: 112 SKQL-NPFGKPRKLDSARHCQLWQVTVANAPEATPLESLAQTYELPLAEGPLKVISLPGV 170
           +KQL + F    KLD+ARHC L+  ++ +      L    + Y L   +G L + +L GV
Sbjct: 122 TKQLPDYFDGGIKLDNARHCMLYSSSLLSEAPEIKLSDWVKDYVLSTPQGELTICNLVGV 181

Query: 171 FSHGRLDRGSALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNTVTLLDVDAFAAAS 230
           FS  RLD G+ LLLEHL  L  G +LDFGCGAGV+ AA+ +  P   +  +D++A A AS
Sbjct: 182 FSEKRLDEGTELLLEHLPTL-KGRVLDFGCGAGVITAALLKANPDLELECVDINAMALAS 240

Query: 231 SRLTLAANGLEAEVLTGDGIDAAPMGLSAILSNPPFHVGVHTDYHATENLLRKAAKHLKN 290
             LTLAANG++A+V   DG+        AI+SNPPFH G+ +        ++++   LK+
Sbjct: 241 CELTLAANGMQAKVYASDGLTQTQGMFDAIISNPPFHDGLDSTTEIATRFVQESEAQLKS 300

Query: 291 GGELRLVANSFLKYQPLIEEHLGVCAIKAEGQGFRIYRAKR 331
           GG  ++VAN  L Y   I +      + AE   ++IY  ++
Sbjct: 301 GGIFQIVANRHLPYSDTIAKFFKTVNVAAENNKYKIYANRK 341