Pairwise Alignments

Query, 332 a.a., Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) from Pseudomonas fluorescens FW300-N2E2

Subject, 377 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 81.3 bits (199), Expect = 4e-20
 Identities = 80/280 (28%), Positives = 118/280 (42%), Gaps = 30/280 (10%)

Query: 69  DTAVVFLPKAKDLTDY---ILNAVAARLAGREVYLVGEKRSGIEGASKQLNPFGKPRKLD 125
           D A+V +   K+LT +   ++       AG  V LVG K   I   S  L  F K   L 
Sbjct: 111 DVALVLMKLPKNLTYFAHQLMRLSQILPAGCRV-LVGAKAKSIN--SSLLALFAK--HLG 165

Query: 126 SARHCQLWQVTVA------NAPEATPLESLAQTYELPLAEGPLKVISLPGVFSHGRLDRG 179
            A     W+ T          P A P      T+ +P  E  L + +L  VF+  +LD G
Sbjct: 166 PANASLAWKKTRVITCISDGKPRALPN---GITWNIP--EFNLTISNLSNVFAANKLDIG 220

Query: 180 SALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNTVTLLDVDAFAAASSRLTLAANG 239
           + ++L++L +     ++D GCG GVLG    + YP+  +  +D    A AS++     N 
Sbjct: 221 ARIMLDNLPQGKFNTVVDLGCGNGVLGLRAAQLYPNADIHFIDDSEMAVASAKANWTMNQ 280

Query: 240 LEA--------EVLTGDGIDAAPMGLSAILSNPPFHVGVHTDYHATENLLRKAAKHLKNG 291
           L          + +T    D  P     +L NPPFH G     H    +   A + LKNG
Sbjct: 281 LAEGKGHFHWDDCMTHLPEDIEP---DLVLCNPPFHQGEAITDHIAWQMFLDARRRLKNG 337

Query: 292 GELRLVANSFLKYQPLIEEHLGVCAIKAEGQGFRIYRAKR 331
           G L +V N  L Y   ++     C   A    F I +A++
Sbjct: 338 GILHIVGNRHLAYHVKLQRLFKNCTTVASNGKFVILQAQK 377