Pairwise Alignments

Query, 332 a.a., Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) from Pseudomonas fluorescens FW300-N2E2

Subject, 353 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  176 bits (447), Expect = 6e-49
 Identities = 121/334 (36%), Positives = 179/334 (53%), Gaps = 13/334 (3%)

Query: 5   SEVLLRQAE-LFQGSVLLAGLPADDLLGRL------PEAHGWCWHAGDQAALDARFPERS 57
           S+V++R  E L Q  VL+    AD L   L       +A    +H     A  A    R 
Sbjct: 17  SQVIIRNQETLSQHKVLVLNHEADLLPKALLDVASSVDALALDYHHYLHLAPQANNKLRC 76

Query: 58  HFGVTVPERG-FDTAVVFLPKAKDLTDYILNAVAARLAGR-EVYLVGEKRSGIEGASKQL 115
           +FG  +P +  ++T +V+ PKAK L  Y+ N  A  L    ++ +VGE + GI+   K L
Sbjct: 77  YFGHQLPHQNKYNTVIVYFPKAKPLAPYLFNLAAQHLVPNGQLLVVGENKGGIKSLVKLL 136

Query: 116 -NPFGKPRKLDSARHCQLWQVTVAN-APEATPLESLAQTYELPLAEGPLKVISLPGVFSH 173
            N F    KLD+ARH  L+  ++ + APE T L   A  Y+L   +G + + +L GVFS 
Sbjct: 137 PNYFAAGVKLDNARHSLLFGSSLIDTAPEIT-LSDWASQYQLSTPQGNITICNLVGVFSE 195

Query: 174 GRLDRGSALLLEHLDKLPSGHLLDFGCGAGVLGAAVKRRYPHNTVTLLDVDAFAAASSRL 233
             LD+G+ LLL HL  L SG +LDFGCGAGV+ A + +  P  ++  +D++A A AS  L
Sbjct: 196 KHLDQGTELLLSHLPTL-SGRVLDFGCGAGVIAATLLKAQPTLSLECIDINAMALASCEL 254

Query: 234 TLAANGLEAEVLTGDGIDAAPMGLSAILSNPPFHVGVHTDYHATENLLRKAAKHLKNGGE 293
           TLAANG+ A+V   DG+         I+SNPPFH G+ +  +  +  +  +AK L++ G 
Sbjct: 255 TLAANGMMAKVYPSDGLAQTSGKFDGIISNPPFHDGLASTTNIAQRFVADSAKQLQSKGI 314

Query: 294 LRLVANSFLKYQPLIEEHLGVCAIKAEGQGFRIY 327
            ++VAN  L Y   I    G   + AE   +++Y
Sbjct: 315 WQIVANRHLPYSDTIAAEFGQLTVPAENNKYKLY 348