Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score = 79.0 bits (193), Expect = 4e-19
 Identities = 68/266 (25%), Positives = 119/266 (44%), Gaps = 16/266 (6%)

Query: 113 VVLVFEAARRVMGIALPIICGLFLAYGLFGEYLPGDLAHRGYGLDQIINQLSFGTEGLYG 172
           ++ +F A   +M I +P+   L LA         G L    +  D +   L+     L+ 
Sbjct: 3   ILFLFAALFVLMFIGVPVAVSLGLA---------GSLTIMIFSQDSV-RSLAIK---LFE 49

Query: 173 TPTYVSATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITG 232
           T  + +   I  F+L GAF+   G+ +   DFA    GH  GG A  AV++  L   ++G
Sbjct: 50  TSEHYTLLAIPFFLLAGAFMTTGGVARRLIDFANACVGHIRGGLAIGAVLACMLFAALSG 109

Query: 233 SGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPF 292
           S  A V   G   I  M R GY  AF  G+   +     ++PP +  V +  A   +V  
Sbjct: 110 SSPATVAAVGSIAIAGMVRSGYPQAFGAGIVCNAGTLGILIPPSVVMVVYAAATETSVG- 168

Query: 293 VEIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLV 352
            ++  A ++P  L  G++   +++ A + +L  LP+        A + + + L+ + +++
Sbjct: 169 -KLFMAGVVPGILLGGALMIAIYIIAVKKNLPALPRASFREWLSAARKAIWGLLLMVIIL 227

Query: 353 YLLFSGR-TPLFSGMVGLALTAIVIL 377
             ++SG  TP  +  V    +A V L
Sbjct: 228 GGIYSGMFTPTEAAAVAAVYSAFVAL 253