Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 458 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score = 67.8 bits (164), Expect = 1e-15
 Identities = 92/336 (27%), Positives = 146/336 (43%), Gaps = 38/336 (11%)

Query: 184 LFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQ 243
           LF+  G  LEK+ + +   +    LFG   GG A    V  AL+   TG   A VVT G 
Sbjct: 70  LFVFMGVMLEKSRVAEDLLESMSRLFGTMRGGLAISVCVVGALLAASTGIVGATVVTMGL 129

Query: 244 FTIPLMKRFGYKAAFAGGVEATSSMGSQIMPP-----VMGAV---AFIMAE--------- 286
             +P M R GY  A A G  A +    QI+PP     ++G V   AF  A+         
Sbjct: 130 LALPTMLRRGYDPAIATGTLAATGTLGQIIPPSIILVLLGDVMSSAFQQAQLKMGIFSPK 189

Query: 287 TINVPFVEIAKAALIPACLYFGSVFWMVHLEA----KRSDLKGLPKDQC-PSAWGAVKDS 341
           T++V   ++   ALIP  L  G   ++++L A    +   L  LP+++  P  WG +  S
Sbjct: 190 TVSVG--DLFVGALIPGLLLVG--MYILYLIAVAIFQPKKLPALPQEELGPIEWGKLIGS 245

Query: 342 WFLLIPLGVLVYLLFSGRTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLL 401
             LL PL ++  +L S    + +G       A +    A +L ++   L    +  L  +
Sbjct: 246 --LLPPLALITAVLGS----ILAGYATPTEAAAIGALGATLLSIAKGQLN---FTQLKQV 296

Query: 402 CVGFFRLGIGVVFAVIGVLVVACWFMQGTRETLV-ICLHALVDGARHA-VPVGIACALVG 459
             G   +   V   +IG  + +  F     E L+   LH+L  G   A + V +   L+G
Sbjct: 297 AFGTTEITSMVFLILIGASLFSLVFRGFGGEVLIEDALHSLPGGVLGAFLVVMLVIFLLG 356

Query: 460 SIIAVVSLTGVASTFAG-YILAIGRDNLLLSLILTM 494
            I+  + +  V     G  +LA+G D + L ++  +
Sbjct: 357 FILDFIEIIFVVVPIVGPILLAMGLDPVWLGVMFAI 392