Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., TRAP transporter, DctM subunit from Pseudomonas stutzeri RCH2

 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 99/416 (23%), Positives = 169/416 (40%), Gaps = 58/416 (13%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           F+L GA + + GM +    FA  L G   GG + V + +S   G I+GS +A+  + G  
Sbjct: 61  FVLAGAIMAEGGMARRLVAFAGVLVGFVRGGLSLVNITASTFFGAISGSSLADTASVGSV 120

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            IP M++ GY   F+  V  + S+ + + PP   +V + +A    V    +  A + P  
Sbjct: 121 LIPEMEKKGYPREFSTAVTISGSVQALLTPPSHNSVIYSLAAGGTVSIAALFVAGIGPGL 180

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFS 364
           L   ++  +  L A++   +  PK +      A+K          + V  L+        
Sbjct: 181 LLSATMATLCLLFARK---RNYPKGEVVPLRQALK----------ICVEALWG------- 220

Query: 365 GMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVAC 424
                 +T ++ILG                    G+L  G F        AV+    V  
Sbjct: 221 -----LMTMVIILG--------------------GILS-GVFTATESAAVAVVWAFFVTM 254

Query: 425 WFMQGTR-ETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGR 483
           +  +  +   L   LH  V   R    V I  A   S   +++L  + S      LA+  
Sbjct: 255 FIYRDYKWSELPRMLHRTV---RTLSIVMILIAFAASFGYIMTLMQIPSKITTAFLALS- 310

Query: 484 DNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILAD 543
           DN  + L+      LVLG  +   P  +I + I  P ++  GV  +   M +     +  
Sbjct: 311 DNRYVILMCINFMLLVLGTLMDMAPLILILTPILLPVVVSFGVDPVHFGMIMLVNLGIGL 370

Query: 544 LTPPVALACFAAAPIAR---ESGLK--ISFWAVRIA--LAGFVIPFMTVYNPALML 592
           +TPPV    F  A I +   E+ +K  + F+A   A  +A   IP ++++ P+++L
Sbjct: 371 ITPPVGAVLFVGAAIGKVTIENTVKALLPFYAALFAVLMAVTYIPMISLWLPSVVL 426