Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 93/403 (23%), Positives = 156/403 (38%), Gaps = 62/403 (15%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FIL G  +   G+ +     A   FGHK GG   VA+ +S L+ +++GS +A+       
Sbjct: 62  FILAGELMNAGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALATL 121

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            +P+M+  GY  + + G+ A   + + I+PP M  V + +    ++   ++  A ++P  
Sbjct: 122 LLPMMRERGYPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVVTGTSIS--QLFLAGMVPGL 179

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFS 364
           +    +     L A+R D    PK +  SA                        R  L  
Sbjct: 180 IMGMGLIVAWTLIARRID---EPKQEKASA---------------------AERRRVLVD 215

Query: 365 GMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVAC 424
           G   L L  I++ G                 +  GL    F      VV AV  + V   
Sbjct: 216 GAAALMLPVIIVGG-----------------LRGGL----FTPTEAAVVAAVYALAVSTL 254

Query: 425 WFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRD 484
            + +     LV     L   +R    V   CA       +++L  +    A  +  + +D
Sbjct: 255 LYRELNWAGLV---EVLTRASRTTASVMFLCAAATVSAYMITLAQLPDEIAAMLGPLAQD 311

Query: 485 NLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGV-PLIVSHMFVFYFGILAD 543
             LL ++  ML  + +GM +   P  +I   + AP  ++ G+ P+    MFV   G +  
Sbjct: 312 PKLL-MVAIMLLMIAVGMVLDLTPTILILGPVLAPIAIKAGIDPVYFGVMFVL-IGSIGL 369

Query: 544 LTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVY 586
           +TPPV         I R   L++        L   V+PF  +Y
Sbjct: 370 ITPPVGTVLNVVGGIGR---LRME------TLVRGVMPFFLIY 403



 Score = 28.1 bits (61), Expect = 9e-04
 Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 403 VGFFRLGIGVVFAVIGVLVVACWFMQ-GTRETLVICLHALVDG-ARHAVPVGIACALVGS 460
           +GF  LG+ + FA++    V  W++     + L   L A  D     AVP  I   L G 
Sbjct: 11  LGFMTLGMPIAFALLLTGSVLMWYLDFWDVQLLAQNLQAGADSFPLLAVPFFI---LAGE 67

Query: 461 IIAVVSLTGVASTFAGYILA-IGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAP 519
           ++   +  G++        A  G     L  +    + L+  M    + +    +++  P
Sbjct: 68  LM---NAGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALATLLLP 124

Query: 520 ALLELGVPLIVSHMFVFYFGILADLTPP 547
            + E G PL  S   V   GI+A + PP
Sbjct: 125 MMRERGYPLSSSSGLVAAGGIIAPIIPP 152