Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  266 bits (679), Expect = 3e-75
 Identities = 207/692 (29%), Positives = 349/692 (50%), Gaps = 53/692 (7%)

Query: 17  KTLFYVALLFSIFQIVTAAFSPVSSIVLRAVHVGFLLWVVFLSYPAHGRQRPWQ-PLAW- 74
           +T+  + +L S+  I     S  S + + A+H      +  L YPA  R R  +  LA+ 
Sbjct: 25  RTISVLCVLLSLAHIWFNTLSTWSELWISAIHFAGFAMICALWYPALPRWRGSKVALAFD 84

Query: 75  -VLSLGGVATALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFEAARRVMGIALPIICG 133
            +L+L  +A  +Y  + E  L +R     T+D +  I+ +++V E  RR MG  +P +  
Sbjct: 85  VLLALLALACLIYLMLAEDALYERGVKFVTSDWVFSILAILIVMEMIRRTMGWFIPTLIL 144

Query: 134 LFLAY-GLFGEYLPGDLAHRGYGLDQIINQLSFGTEGLYGTPTYVSATYIFLFILFGAFL 192
           + L Y  ++G++  G     G   + ++ +  + +EG++G+   +S +++F+FILFGAFL
Sbjct: 145 ICLTYVSVWGKWAGGIFHFPGLSAETLLYRSFYSSEGMFGSIAAISWSFVFMFILFGAFL 204

Query: 193 EKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQFTIPLMKRF 252
            ++G+     D +    G  +GGP  +AV++S LMG+++GS +AN V+TG  TIP+MK+ 
Sbjct: 205 VRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVITIPMMKKA 264

Query: 253 GYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPACLYFGSVFW 312
           G+ A FA GVEA +S G Q+MPPVMGA AFIMA    +P+V+I   + IPA +YF SV +
Sbjct: 265 GFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPALIYFLSVAF 324

Query: 313 MVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFSGMVGLALT 372
            V +EAKR  ++ +   Q P     +   W  LIPL VLV LL  G TP ++   GL++ 
Sbjct: 325 FVRIEAKRMGVQIVTTSQEPFM-KVLLSGWHNLIPLAVLVTLLVVGFTPTYAA--GLSIL 381

Query: 373 AIVI---------LGSAIILKV-----SNYALRCAFWIALGLLCVGFFRLGIGVVFAVIG 418
           ++++         +G   I++       N A      + +GL+       GIG  F+   
Sbjct: 382 SVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTTGIGNTFS--- 438

Query: 419 VLVVACWFMQGTRETLV-ICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGY 477
            L++  W        LV I L +LV G    +PV  A  ++G++ A      +A +    
Sbjct: 439 -LMINNWANGDLLTMLVLITLASLVLGM--GLPVTAAYIVLGTLSAPALYKLLAESQLVD 495

Query: 478 ILAIGR-----DNLLLSLILTMLTCLVLGMG-------IPTIPNYIITSSIAAPALLE-L 524
           ++  G+       + +      L+ L   M        I  +P   + + +     LE +
Sbjct: 496 LMVSGQLPEQAKAIFMLAAPDQLSLLNAPMAAEKAHELISLVPADFVETLLQQSLGLEAI 555

Query: 525 GVPLIVSHMFVFYFGILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMT 584
           G+ L+ +H+ +F+    +++TPPV L  FAAA IA+   ++  F A +IA   +++P + 
Sbjct: 556 GLALLSAHLIIFWLSQDSNVTPPVCLTAFAAATIAKTPPMRTGFTAWKIAKGLYLVPVLI 615

Query: 585 VYNPALMLQGDNLWMTAYMLIKTLLAV-GLWGM--ASTGYLQQKMPIWERLLCFAAGALL 641
            Y   +       W  A ++   + A+ G + M  A  GYL+ ++ +  RLL    G LL
Sbjct: 616 AYTQLIS------WDVATVVTIGIFAIFGTYAMIGAIEGYLEGRLNLLWRLLLAVIGVLL 669

Query: 642 V-VALPVTDEIGFVLGGLLILQHVWRARRSGR 672
           V  +LP+   I  V   L I   ++  + + R
Sbjct: 670 VWPSLPIW--IRLVCVALFIAIFIYSGKTAAR 699