Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 427 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score = 75.1 bits (183), Expect = 6e-18
 Identities = 86/397 (21%), Positives = 157/397 (39%), Gaps = 53/397 (13%)

Query: 163 LSFGTEGLYGTPTYVSATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVV 222
           ++F  + + G     +   +  F+L G  +  AG+ +   +FA  L GH  G    V ++
Sbjct: 38  INFAAQQMLGGIDNFTLLAVPFFVLTGHLMNSAGITERIFNFAKSLVGHITGSLGHVNIM 97

Query: 223 SSALMGTITGSGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAF 282
           +S L   ++GS +A+    GQ  I  M+   Y   FAGG+ A S +   ++PP +  V +
Sbjct: 98  ASLLFSGMSGSALADAGGLGQLEIKSMRDAKYHDDFAGGLTAASCIIGPLVPPSVPLVIY 157

Query: 283 IMAETINVPFVEIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSW 342
            +    ++  + +A A  IP  L   ++  M +   K+     LPK      + ++K+++
Sbjct: 158 GVVSNTSIGALFLAGA--IPGLLCCIALMVMSYFICKKRGYMTLPKASRREQFKSLKEAF 215

Query: 343 FLLIPLGVLVYLLFSGR-TPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLL 401
             L+   +++  +FSG+ TP  +  V                  S YAL     +   L 
Sbjct: 216 LSLLTPVIIIGGIFSGKFTPTEAAAVS-----------------SLYALFLGTVVYNTLT 258

Query: 402 CVGFFRLGIGVVFAVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSI 461
             GF  +                   +    T V+ L  +               + G I
Sbjct: 259 LQGFIEI-----------------LKETVNTTAVVALMVM------------GVTVFGWI 289

Query: 462 IAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPAL 521
           +A   L       A Y L I  DN L+ L+L  L  L LG  I ++   ++      P  
Sbjct: 290 VAREQL---PQMLADYFLTIS-DNPLVLLLLINLLLLFLGTFIESLALLLLLVPFLVPVA 345

Query: 522 LELGVPLIVSHMFVFYFGILADLTPPVALACFAAAPI 558
             +G+  +   +      ++  LTPP+ +A +  + +
Sbjct: 346 SAVGIDPVHFGVMAILNLMIGILTPPMGMALYVVSRV 382