Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 62.4 bits (150), Expect = 4e-14
 Identities = 88/389 (22%), Positives = 152/389 (39%), Gaps = 66/389 (16%)

Query: 184 LFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQ 243
           LF+  G  L+K  + +   +    LFG   GG A   V+   L+   TG   A+VV  G 
Sbjct: 62  LFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGL 121

Query: 244 FTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPA 303
            ++P+M ++ Y    A G    S    QI+PP    V  ++ + + VP  ++ +AAL P 
Sbjct: 122 ISLPVMLKYRYDKGLACGTICASGTLGQIIPP--SIVLILLGDVLGVPVGDLFQAALWPG 179

Query: 304 CLYFGSVFWMVHLEAKRSDLKGLPKD---QCPSAWGAVKDSWFLLIPLGVLVYLLFSGRT 360
            +   +    + + AK +    +P +           VK    ++ PL ++V +L S   
Sbjct: 180 LMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGS--- 236

Query: 361 PLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVL 420
            +F+G+     +A +    AI+L                 L  G F              
Sbjct: 237 -IFAGVATPTESAALGGAGAILL----------------ALAYGQF-------------- 265

Query: 421 VVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAG---- 476
               W M             + D ++  V V    A+V +I+   +   +A T+ G    
Sbjct: 266 ---SWSM-------------VYDASKETVKV---TAMVFAILLGATAFSMAFTYTGGDEL 306

Query: 477 ---YILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHM 533
              +++ +  D     LI+TML  L+LG  I  +    I   I AP  + + V +    +
Sbjct: 307 VEEWMMNLPGDKWGF-LIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDMTWFAI 365

Query: 534 FVFYFGILADLTPPVALACFAAAPIARES 562
            +      + LTPP   + F    +A +S
Sbjct: 366 LIAMNLQTSFLTPPFGFSLFYLKGVAPKS 394