Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 419 a.a., transmembrane protein from Sinorhizobium meliloti 1021

 Score = 81.3 bits (199), Expect = 8e-20
 Identities = 97/436 (22%), Positives = 166/436 (38%), Gaps = 73/436 (16%)

Query: 172 GTPTYVSATYIF------------LFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKV 219
           GTPT ++   +F             FIL G+ +    + +    FA  L G   GG  +V
Sbjct: 36  GTPTVLAVVKLFQPTQSFPLLAIPFFILSGSLMMSGTLGQKLVQFAAALVGRFHGGMGQV 95

Query: 220 AVVSSALMGTITGSGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGA 279
            VV S + G ++GS +A     G   IP  K+ GY A FA  V A+SS  + ++PP +  
Sbjct: 96  TVVGSTIFGGVSGSAVAEASALGSMLIPWQKKEGYPAGFAAAVTASSSTIAGLIPPSIPL 155

Query: 280 VAFIMAETINVPFVEIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVK 339
           + F  +   N     +  AA++P  +  G +  + +L  +  +   L       ++G   
Sbjct: 156 ILF--STVANSSIASLFSAAVLPGLMLAGGMMIVCYLSGRIRNFPRLTDAGQLKSFGRSM 213

Query: 340 DSWF--LLIPLGVLVYLLFSGRTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIA 397
            S    L +P  +++ L     TP          T + ++     L VS    R   W  
Sbjct: 214 LSALPALAMPFFIILLLRAGIATP----------TEVSVIAVFYALLVSLLLYRDLTWER 263

Query: 398 LGLLCVGFFRLGIGVVFAVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACAL 457
           +    VG       V+   + +LV+A   + G         H L+      +    A   
Sbjct: 264 IYAALVG------TVITTGVVMLVIAASSLVG---------HVLITERVPTIVANWALET 308

Query: 458 VGSIIAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIA 517
           +GS I ++ +  +     G  L     +L  +++L   T + +G  I   P         
Sbjct: 309 LGSAILIILMMNLIMLVVGMFL-----DLPAAILLLGPTFVAIGHAIGMDP--------- 354

Query: 518 APALLELGVPLIVSHMFVFYFGILADLTPPVALACFAAAPIARE--SGLKISFWAVRIAL 575
               ++LGV + ++     +       TPP+    F  A IAR     +    W   I  
Sbjct: 355 ----IQLGVMICINLSIGLF-------TPPIGTTLFIGAVIARVPIGAVVKELWPFYIVA 403

Query: 576 AGFV-----IPFMTVY 586
           A  +     +P +T+Y
Sbjct: 404 AAVLVLMSYVPALTIY 419