Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., C4-dicarboxylate transport system, permease large protein transmembrane from Sinorhizobium meliloti 1021

 Score = 67.4 bits (163), Expect = 1e-15
 Identities = 120/525 (22%), Positives = 204/525 (38%), Gaps = 118/525 (22%)

Query: 108 MGIVLVVLVFEAARRVMGIALPIICGLFL---AYGLFGEYLPGDLAHRGYGLDQIINQLS 164
           M + L+VL F     ++ I  PI   L L   AY L G+ LP         L  +  ++ 
Sbjct: 1   MSLALLVL-FAVFILLLLIDAPIAIALALSSVAYLLVGDVLP---------LMVVAQRMV 50

Query: 165 FGTEGLYGTPTYVSATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSS 224
            G +         +   I LF+L G  +   G+     +    + G + GG A V + + 
Sbjct: 51  AGIDSF-------TLLAIPLFLLAGLLMVHGGLAPRIVNLCAAVVGQRTGGLAIVMIAAC 103

Query: 225 ALMGTITGSGIANVVTTGQFTIPLMKRFGYKAAF-AGGVEATSSMGSQIMPPVMGAVAFI 283
            + G+++GSG+A+VV  G   +P MK  GY   F A G+    S+G+ I P +   V  +
Sbjct: 104 MMFGSLSGSGVADVVAIGSMLLPAMKERGYHPGFSAAGLGCAGSLGTVIPPSI---VLIV 160

Query: 284 MAETINVPFVEIAKAALIPACLY-FG--SVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKD 340
                     ++   ++ P  L  FG   V W                      W + K+
Sbjct: 161 YGTATGTSIGQLFIHSIGPGILLGFGLMVVAW----------------------WISRKN 198

Query: 341 SWFLLIPLGVLVYLLFSGRTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGL 400
            W               G  P     +G AL   V+   A++  V          I +G 
Sbjct: 199 GW--------------KGGEPFSWTRLGTALRESVL---ALLAPV----------IIVGG 231

Query: 401 LCVGFF----RLGIGVVFAVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACA 456
           +  G F      GIGV +A   +LV A  + Q T   +   L    +     + V  A +
Sbjct: 232 IRFGIFTPTEAAGIGVAYA---LLVGALIYRQLTLAKVFSLLRDTTEMTGSILIVIAAAS 288

Query: 457 LVGSIIAVVSLTG-VASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSS 515
           + G I+ V  +   V +   G       ++  ++L+L M+  LVLG  + +I   +I + 
Sbjct: 289 VFGWILTVEQVPQLVVNAITG-----ATESATVALMLMMVAVLVLGTFMESIAIILILAP 343

Query: 516 IAAPALLELGVPLIVSHMFVFYFGILADL-------TPPVALACFAAAPIARESGLKISF 568
           +  P L    +  +       YFG+L  +       TPP+ +   AA    R  G+ +S 
Sbjct: 344 VFLPVLRVFEIDPV-------YFGVLLTINLAIGANTPPLGIDLMAA---CRTGGIPMS- 392

Query: 569 WAVRIALAGFVIPFMTVYNPALMLQGDNLWMTAYMLIKTLLAVGL 613
                A   +++PF+ V    + L      +  +  + TL+++G+
Sbjct: 393 -----ASFRYLLPFIGVMALIMFL------LVLFPGLMTLMSLGM 426