Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 427 a.a., C4-dicarboxylate large membrane transport protein from Sinorhizobium meliloti 1021

 Score = 95.1 bits (235), Expect = 6e-24
 Identities = 106/423 (25%), Positives = 180/423 (42%), Gaps = 66/423 (15%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FI  G  + + G+ +    FA  L GH  GG  +V +V++ L G I+GS +A     G  
Sbjct: 61  FIYAGDLMVRGGIAQKIVAFAASLVGHIRGGLGQVNIVTATLFGGISGSAVAEAAAVGGL 120

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            IP MK+ GY A +A  V + +++ + ++PP    + + ++    +   ++  A ++P  
Sbjct: 121 MIPQMKQRGYGADYAVNVTSMAALIALMLPPSHNMIIYSISAGGKISIADLFTAGILPGL 180

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFS 364
           LY  ++    +  A+R   +G P +  P   G  +   +LLI             TP   
Sbjct: 181 LYAAALMATAYFVARR---RGYPTEVFP---GFARVGRYLLI------------STP--- 219

Query: 365 GMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVAC 424
              GL L  I+  G           +R   + A    C       I V++A+   + V  
Sbjct: 220 ---GLLLIGIIFGG-----------VRSGVFTATESSC-------IAVLYALAVTVFV-- 256

Query: 425 WFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRD 484
            + Q T +  V    A V   R    V +   +  +   +++   V +    ++  I  +
Sbjct: 257 -YRQMTWQDFVQATFAAV---RTTAMVLLIIGMAAAFSWLMAFLRVPAALIDWMNTISEN 312

Query: 485 NLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGV-PLIVSHMFVFYFGILAD 543
            +++ L+L +L  L LG  +   P  II + I  P  +  GV P+    + +  FGI  +
Sbjct: 313 PIIILLLLNVL-MLFLGTFMDMGPTIIICTPIFLPVAMAYGVDPVHFGVIMILNFGIGLN 371

Query: 544 LTPPVALACFAAAPIARESGLKISFW-AVR----IALAGFVIPFMTVYNPALMLQGDNLW 598
            TPPV    F A  +      KIS W A+R      LAG ++  +  Y PAL     +LW
Sbjct: 372 -TPPVGAVQFVACAVG-----KISVWEAMRSIWPFYLAGLIVLGLVTYVPAL-----SLW 420

Query: 599 MTA 601
           + A
Sbjct: 421 LPA 423