Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 437 a.a., large C4-dicarboxylate uptake permease, DedA family protein from Sinorhizobium meliloti 1021

 Score = 66.6 bits (161), Expect = 2e-15
 Identities = 87/425 (20%), Positives = 161/425 (37%), Gaps = 58/425 (13%)

Query: 177 VSATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIA 236
           VS   + LF+L G  +  +G+ +     A  L GH  G  A++  V   L+G +T S  A
Sbjct: 58  VSLLALPLFVLAGCIMNASGITRRLLALADVLVGHMTGALAQMCTVLGTLLGGLTASANA 117

Query: 237 NVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAF-IMAETINVPFVEI 295
           +     +     M + GY  AFA  + +++++ + ++PP +G + +  +AET       +
Sbjct: 118 DAAMLAKTLGVEMSQRGYSRAFAAVITSSAAIITSLIPPSIGLIVYGFLAET---SIGRL 174

Query: 296 AKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLL 355
             A +IP  +    +    +  A++   K L K++   A                     
Sbjct: 175 FAAGVIPGLVLATGLMVTTYFIARKRGYKPLRKERATRA--------------------- 213

Query: 356 FSGRTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFA 415
             G   L  G+  L++  ++  G+                        G F         
Sbjct: 214 -EGVRALIDGLWALSIPVVIFAGTR----------------------YGLFTTTEAGAVV 250

Query: 416 VIGVLVVACWFMQGTRE-TLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTF 474
           V+ VL VA +   G RE T       L +  R +  V I      +    ++   V    
Sbjct: 251 VVYVLFVAVF---GYREFTFRQIPEVLAEAVRDSAVVMIMICAAAAFGFYLAWEQVPQAM 307

Query: 475 AGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMF 534
           +G+ L    DN LL L+L  +  +V+G  I      II + +  P +  +G+  +   + 
Sbjct: 308 SGW-LGEATDNPLLMLLLINVLLIVIGTAIEGSAALIILTPMLIPIIDGVGIDRVHFGVV 366

Query: 535 VFYFGILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQG 594
                 +A +TPPV    + ++ +     LK+   A    +  ++   M +     M   
Sbjct: 367 FITNLTIAGITPPVGGLMYISSMV-----LKVPMMAYAREVLPYLAMMMVILVMLSMFPQ 421

Query: 595 DNLWM 599
            +LW+
Sbjct: 422 LSLWL 426