Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 421 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score = 79.3 bits (194), Expect = 3e-19
 Identities = 102/397 (25%), Positives = 165/397 (41%), Gaps = 55/397 (13%)

Query: 164 SFGTEGLYGTPTYVSATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVS 223
           SF T+   G   Y     I LF+L G  +   G+ +   D  M   G   GG A V +++
Sbjct: 40  SFPTQLFGGVDNY-GLISIPLFVLIGEIMNGGGITRRIIDMTMAFVGAMRGGLAYVNLLA 98

Query: 224 SALMGTITGSGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPP-VMGAVAF 282
           +  + +I GS  A V    Q  +P M++ GY   FA G+ A S M   I+PP +M  V  
Sbjct: 99  NMFVASILGSATAQVAVMAQMMVPEMEKKGYDKTFAAGLTAYSGMLGPIIPPSIMFVVYS 158

Query: 283 IMAETINVPFVEIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSW 342
           ++A+   VP  ++  A ++P  L   +   ++                  +A G V +  
Sbjct: 159 VLAQ---VPVSDMLAAGIVPGILLTVAFCLVI------------------AAMGFVYN-- 195

Query: 343 FLLIPLGVLVYLLFSGRTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLC 402
               P G  + L    R  +    +   L   VI+GS  IL     A   A   A+  + 
Sbjct: 196 ---YPRGERMKL--QERVRIVLDALPTLLIPFVIVGS--ILSGLANATEAAAVGAVAAVL 248

Query: 403 VGFFRLGIGVVFAVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSII 462
           VG F +G  + F+ +  +++      G    +V+ L              +A A V S +
Sbjct: 249 VGCFWIG-ELKFSDLPRMMLRA----GIYSAVVLFL--------------VAAAAVFSWV 289

Query: 463 AVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALL 522
            V  +  V    AG++  +  D +   L++ ++  LV+G  I   P  I+T  I  P   
Sbjct: 290 LVYGM--VPQQVAGWVQTVASDPVTFMLLVNVI-LLVIGTVIDGAPGLIMTVPILLPIAT 346

Query: 523 EL-GVPLIVSHMFVFYFGILADLTPPVALACFAAAPI 558
           E+ G+  I   + V    +L  L+PPV L  F AA +
Sbjct: 347 EVYGIDPIHFGVVVVVNLVLGFLSPPVGLCFFVAAAV 383