Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 426 a.a., permease from Sinorhizobium meliloti 1021

 Score = 91.7 bits (226), Expect = 6e-23
 Identities = 93/401 (23%), Positives = 158/401 (39%), Gaps = 56/401 (13%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FIL    +  +G+ +   DFA  L GH  GG   V +++S L   ++GS +A+    GQ 
Sbjct: 59  FILTAQLMNLSGVTERIFDFAKALVGHIRGGLGHVNIMASVLFSGMSGSAVADAAGLGQL 118

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            I  M+  GY   F+G + A S++   ++PP +  V +      N     +    ++P  
Sbjct: 119 EIKAMRDAGYDEQFSGSITAASAIIGPLIPPSIPLVVY--GVIANTSIGGLFLGGIVPGL 176

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFS 364
           L   S+  MV++ A R +     +      W      W  L+PL +  +++  G   +F+
Sbjct: 177 LCAASLMIMVYVIAWRRNYATAQRAGFRRVWSTF---WHALLPL-ITPFIIIGG---IFA 229

Query: 365 GMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVAC 424
           G+      A+V    A+ L V  Y                       + FA +  ++   
Sbjct: 230 GVFSPTEAAVVAASYALFLGVVVYR---------------------EITFAKLVTVL--- 265

Query: 425 WFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRD 484
                 RET+            H   VG+    V     V++   V    A + L    D
Sbjct: 266 ------RETV-----------SHTAAVGLLIMGVSLFGYVIAREQVPQHVATFFLTYAED 308

Query: 485 NLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILADL 544
            L   LIL  L  L LG  I  +   ++   +  P  L+ GV  +   + V +  ++  L
Sbjct: 309 PLTF-LILVNLMLLALGTFIEALAILLLIVPVLVPTALQFGVDPVHFGVMVVFNLMIGIL 367

Query: 545 TPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTV 585
           TPP+ +A F  + +A      I F  +   +   +IP + V
Sbjct: 368 TPPMGVALFVVSKVA-----DIPFGVLARGILPLLIPLVVV 403