Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 827 a.a., hypothetical protein from Sinorhizobium meliloti 1021

 Score =  375 bits (963), Expect = e-108
 Identities = 233/689 (33%), Positives = 363/689 (52%), Gaps = 93/689 (13%)

Query: 24  LLFSIFQIVTAA-------FSPVSSIVLRAVHVGFLLWVVFLSYPA-HGRQRPWQPLA-W 74
           + +S+FQ+  A+       F  ++    RA+H+GF L++ FL+YPA     R   PLA W
Sbjct: 1   MAWSLFQLWYASPLPFVFGFGILNDTEARAIHLGFALFLTFLAYPALKSSPRDRVPLADW 60

Query: 75  VLSLGGVATALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFEAARRVMGIALPIICGL 134
           VL   G     Y ++F  +L  R G  +T D++ G   ++L+ EA RR +G+ +  + G+
Sbjct: 61  VLGALGAFAGAYLFLFYGELAGRPGQPSTLDLVTGTAGILLLLEATRRALGLPMVFVAGV 120

Query: 135 FLAYGLFGEYLPGDLAHRGYGLDQIINQLSFGTEGLYGTPTYVSATYIFLFILFGAFLEK 194
           F+ Y   G+Y+P  + HRG  L + IN     TEG++G    VS +++FLF+LFG  LEK
Sbjct: 121 FIFYTFAGQYMPDVIQHRGASLVKFINHQWLTTEGVFGIALGVSTSFVFLFVLFGTLLEK 180

Query: 195 AGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQFTIPLMKRFGY 254
           AG        ++ L GH  GGPAKVAVVSSAL G ++GS ++NVV+ G FTIPLMKR G 
Sbjct: 181 AGAGNWMMQISIALLGHLRGGPAKVAVVSSALNGVVSGSSVSNVVSGGIFTIPLMKRTGL 240

Query: 255 KAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPACLYFGSVFWMV 314
               AG +EA++S+  QIMPPVMGA AF+M E + +P+ EI K AL+PA   + ++ +MV
Sbjct: 241 SGVKAGAIEASASINGQIMPPVMGAAAFLMVEYVGIPYSEIVKHALLPAVFSYIALLYMV 300

Query: 315 HLEAKRSDLKGLPKDQCPSAWGAVKDSW-------------FLLIPLGVL-VYLLFSGRT 360
           HLEA + +++ +P+   P     +++ W               L+  G++ +   F    
Sbjct: 301 HLEAVKLNMQPIPQRPTP-----MRERWLRMGLGLAGSVLAICLLYYGIIAIRAAFGESA 355

Query: 361 PLFSGMVGLA----------------------------------------LTAIVILGSA 380
           PL   + G+A                                        L  IV+L   
Sbjct: 356 PLLLAIAGVALYIATIWYSSRYPDLELDDPDAPILELPRAWDVTRTGLDFLIPIVVLLWC 415

Query: 381 IILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFA---VIGVLVVACWFMQGTRETLVIC 437
           ++++  +  L  AFW  L ++ +   R  +  +F    V G +  A W +          
Sbjct: 416 LMVEQLSPGL-SAFWATLTIIAIVATRKPLMAIFRKEDVAGSVRAAAWDL---------- 464

Query: 438 LHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTC 497
              L  GAR+ + + +A A  G ++  ++LTG+       +  I   N+++ LIL     
Sbjct: 465 TDGLALGARNMIGIAVATATAGIVVGTITLTGLGLMMTELVEFISGGNVIMMLILIAAIS 524

Query: 498 LVLGMGIPTIPNYIITSSIAAPALLELG------VPLIVSHMFVFYFGILADLTPPVALA 551
           LVLGMGIPT  NYI+ +++ AP ++ELG      +PLI  H+FVFYFGI+AD+TPPV LA
Sbjct: 525 LVLGMGIPTTANYILVATLMAPVVVELGSQAGLAIPLIAVHLFVFYFGIMADITPPVGLA 584

Query: 552 CFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQGDNLWM-TAYMLIKTLLA 610
            FAAA I++E  +   F     +L   ++PF+ ++NPA++L G + W  T ++   +L A
Sbjct: 585 AFAAAAISKEDPIATGFQGALYSLRTAILPFVFIFNPAILLIGVDTWAHTIWVAAISLAA 644

Query: 611 VGLWGMASTGYLQQKMPIWER----LLCF 635
           + ++  A+  +   K  +WE     L+CF
Sbjct: 645 ILIFSAATMNWFVTKSRLWESAVLLLVCF 673