Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 427 a.a., TRAP dicarboxylate transporter, DctM subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 74.7 bits (182), Expect = 8e-18
 Identities = 98/417 (23%), Positives = 171/417 (41%), Gaps = 69/417 (16%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FIL G FL   G+ K   +FA  + GH  GG     VV+ AL   I+GS  A VV  G  
Sbjct: 62  FILAGNFLTHGGVAKRMINFATAMVGHWYGGLGLGGVVACALFAAISGSSPATVVAIGSI 121

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            +P M + G+   F  GV  TS     ++PP +  V + +A   +V    +  A ++P  
Sbjct: 122 LLPAMVKQGFPRRFGAGVITTSGALGILIPPSLVMVMYAVATNTSVG--ALFMAGVVPGL 179

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFS 364
           +    +     + A++++   LPK    +   A +++ + L+ + +++  ++SG   +F+
Sbjct: 180 VLATLLGVTTSVIARKNNYPRLPKASWATRAKAFREAIWGLMLVVIVIGGIYSG---IFT 236

Query: 365 GMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVAC 424
                A++A+     A+ +   +  LR    I L    +    L I +  AV+   V+  
Sbjct: 237 PTEAAAMSAVYAFLIAVFV-YKDMPLRGVVKILLSSASMSAMLLYI-ITNAVLFSFVL-- 292

Query: 425 WFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRD 484
                               A   +P  IA  +VG  + +V+   V +     +LA G  
Sbjct: 293 --------------------ANENIPQAIADWIVGKELGIVAFLLVVNVL---LLAAGNF 329

Query: 485 NLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILADL 544
               S++L M                   + I  P  ++LG+  +       +FGIL  +
Sbjct: 330 MEPSSIVLIM-------------------APILFPVAMKLGIDPV-------HFGILIIV 363

Query: 545 T-------PPVALACFAAAPIARE--SGLKISFWAVRIALAGFVIPFMTVYNPALML 592
                   PPV L  + A+ I +   S L ++     + + GF+I  +  Y P L L
Sbjct: 364 NMEVGMCHPPVGLNLYVASGITKMGISELTVAVMPWLLTMLGFLI--VVTYWPGLSL 418