Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 427 a.a., TRAP dicarboxylate transporter, DctM subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 77.8 bits (190), Expect = 1e-18
 Identities = 105/441 (23%), Positives = 168/441 (38%), Gaps = 77/441 (17%)

Query: 169 GLYGTPTYVSATY-------IFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAV 221
           G+   PT V A         I +FIL G   E+ G+ +    FA  + G + GG A VAV
Sbjct: 38  GILSVPTTVYAGIAKYPLLAIPVFILAGLIFERVGVARQLVSFASSIVGARNGGLAIVAV 97

Query: 222 VSSALMGTITGSGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVA 281
           +   +MG I+GSG A+        IP + + GY  AF+  V A  +  + ++PP +  + 
Sbjct: 98  LVCMVMGGISGSGPADAAAVATVMIPSLHKAGYPKAFSASVIAAGAATAILIPPSVAFII 157

Query: 282 F-IMAETINVPFVEIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKD 340
           + ++    +VP   +    LIP  L   S+   +   ++R           P  W ++K 
Sbjct: 158 YSVLVPQASVP--ALFAGGLIPGLLAGLSLLAPIVYLSRRHGFGMADSGPRPGFWVSLKG 215

Query: 341 S-WFLLIPLGVLVYLLFSGRTPLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALG 399
           + W LL P                          ++ILG                     
Sbjct: 216 AIWGLLAP--------------------------VIILGG-------------------- 229

Query: 400 LLCVGFFRLGIGVVFAVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVG 459
            L +G F      V AV   L V  + ++     ++I +  L D A  +  V +  AL  
Sbjct: 230 -LRLGLFTPTEAAVVAVFYGLFVGVFILRTLSGRMLIDM--LADAAEMSGVVLLIIALAS 286

Query: 460 SIIAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAP 519
                 S  G     AG  L    DN ++ L++  L  L LGM +  +  ++I       
Sbjct: 287 VFAWAGSTLGAFDAVAGAALQ-ATDNEVVVLLMLNLLLLGLGMVLDAVSIFLI------- 338

Query: 520 ALLELGVPLIVS-HMFVFYFGILADL-------TPPVALACFAAAPIARESGLKISFWAV 571
            LL L VP + + H    +FG++  +       TPP+A+       IA       + W +
Sbjct: 339 -LLPLLVPFMEAFHWDPVWFGVMVTMNLAVGQFTPPMAVNLMVTTRIAGVRMEAATGWTL 397

Query: 572 RIALAGFVIPFMTVYNPALML 592
               A  V   +  + P L L
Sbjct: 398 WFVGAMIVALMVVTFVPELTL 418