Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 430 a.a., TRAP transporter large permease from Rahnella sp. WP5

 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 91/411 (22%), Positives = 171/411 (41%), Gaps = 55/411 (13%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FIL GA + + G+ +    FA    G   GG + V +V+S   G I+GS +A+  + G  
Sbjct: 61  FILAGAIMAEGGIARRLVSFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSV 120

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            IP M++ GY   FA  V A+ S+ + + PP   +V + +A    V    +  A ++P  
Sbjct: 121 MIPEMEKKGYPRDFAAAVTASGSVQAILTPPSHNSVIYSLATGGTVSIAALFIAGILPGL 180

Query: 305 LYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFS 364
           L   ++  M  + A +   +G PK +               +P        F     +F 
Sbjct: 181 LLSLTLMVMCVVFAHK---RGYPKGE--------------RVP--------FRQALKIFI 215

Query: 365 GMVGLALTAIVILG---SAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLV 421
             +   +T ++I+G   S I     + A+ C +   + +     ++      ++ +  L 
Sbjct: 216 DTLWGLMTIVIIMGGILSGIFTATESAAIACLWSFFVTMFIYRDYK------WSELPKL- 268

Query: 422 VACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAI 481
                M  T +T+ I +          + +G A A  G+++  + L    + F   I   
Sbjct: 269 -----MYRTVKTVSIVM----------ILIGFA-ASFGAVMTYMQLPMRITEFFTSI--- 309

Query: 482 GRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGIL 541
             DN  + L+   +  LV+G  +   P  +I + +  P +L LG+  +   M +     +
Sbjct: 310 -SDNKYVILMWINIMLLVIGTLMDMAPIILILTPVLLPVVLSLGIDPVHFGMIMLVNLGI 368

Query: 542 ADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALML 592
             +TPPV    F A+ ++++S  K+    +      FV+  +  Y P + L
Sbjct: 369 GLITPPVGSVLFVASAVSKQSIEKVVKAMLPFYCVLFVVLMLVTYIPTISL 419