Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 706 a.a., TRAP transporter permease from Rhodopseudomonas palustris CGA009

 Score =  693 bits (1789), Expect = 0.0
 Identities = 365/685 (53%), Positives = 475/685 (69%), Gaps = 15/685 (2%)

Query: 5   QHGIATD--PRDWPKTLFYVALLFSIFQIVTAAFSPVSSIVLRAVHVGFLLWVVF-LSYP 61
           +HG      PR W    + VA+ F+ FQ+V AA++ + S V+R VHVGFLL + F L   
Sbjct: 23  EHGFPAGFGPRGWRYLAYAVAIAFASFQLVIAAWNVLPSQVVRGVHVGFLLLLTFGLIGN 82

Query: 62  AHGRQRPWQPLAWVLSLGGVATALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFEAAR 121
              R    + +AW+    G    LYQW+F +DLIQR GD T  D+ +G +L VL+FE  R
Sbjct: 83  FTARTDFGRAIAWLTGAVGFFCGLYQWIFYADLIQRDGDPTHLDLAVGTLLAVLIFEGTR 142

Query: 122 RVMGIALPIICGLFLAYGLFGEYLPGDLAHRGYGLDQIINQLSFGTEGLYGTPTYVSATY 181
           R+MG ALPI+CG+ L Y  FG+YLP    HRGY  DQ+I  LSFGTEG YG P YVSATY
Sbjct: 143 RLMGPALPIMCGVCLLYWFFGQYLPAPFNHRGYDFDQVITHLSFGTEGFYGVPIYVSATY 202

Query: 182 IFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTT 241
           IFLFILFG+FLE+AGMI+LFTD ++GLFG   GGPAKVAV +S +MGTI+GSG+ANVVT 
Sbjct: 203 IFLFILFGSFLERAGMIQLFTDVSLGLFGRSRGGPAKVAVFASGMMGTISGSGVANVVTV 262

Query: 242 GQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALI 301
           GQFTIPLM +FGY+ AFA GVEAT+SMG QIMPPVMGAVAFIMAET+ V +  I KAA+I
Sbjct: 263 GQFTIPLMIKFGYRRAFAAGVEATASMGGQIMPPVMGAVAFIMAETLGVDYAVIVKAAVI 322

Query: 302 PACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTP 361
           PA LYF S FWMVHLEA +  L G+ K + PSAW A  D W+L++PL  LV++LF G TP
Sbjct: 323 PAILYFASAFWMVHLEAGKHGLVGMKKSEIPSAWRAAVDRWYLILPLAALVFMLFEGFTP 382

Query: 362 LFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGV--VFAVIGV 419
           L++G +GLALT  +ILG++I+   SN  LR  FWI L L+       G+ +  +  ++  
Sbjct: 383 LYAGSMGLALTVALILGASIVHGFSNTVLRYVFWIGLALVVGAASHNGLDIMRIVVIVAA 442

Query: 420 LVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYIL 479
           LV      +G R TL  C  +L D A+ A+ VG+ACA+VG+II +++ TGV + F  +++
Sbjct: 443 LVAIAAITRGGRATLRACRDSLADSAKSALTVGMACAIVGTIIGMMTQTGVGTVFGTWVI 502

Query: 480 AIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFG 539
            +G  +L L+L++TML  ++LG GIPTIP YIIT+++AAPAL +LGVPLIVSHMF FY+G
Sbjct: 503 GLGEHSLFLALVMTMLLSILLGTGIPTIPTYIITAALAAPALAKLGVPLIVSHMFAFYYG 562

Query: 540 ILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQ-GDNL- 597
           I+ADL+PPVALA  AAAPIARE+  KI + A+RIALAG+VIPF+ VY+PALMLQ GD + 
Sbjct: 563 IMADLSPPVALAALAAAPIARENPDKIGWEAMRIALAGYVIPFIAVYSPALMLQPGDPMA 622

Query: 598 ------WMTAYMLIKTLLAVGLWGMASTGYLQQKMPIWERLLCFAAGALLVVALPVTDEI 651
                     Y   K L+A+GL+GM S G+L  +M + ER++ FAA   L+     +D I
Sbjct: 623 AELGFYGAVVYATFKALIAIGLFGMVSIGFLYTRMTVIERIVAFAASICLLGEFAYSDYI 682

Query: 652 GFVLGGLLILQHVWRAR-RSGRALA 675
           GF++  +++    WR R RS  A A
Sbjct: 683 GFLITAVVVAWQ-WRQRPRSAVAAA 706