Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 501 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

 Score = 75.5 bits (184), Expect = 6e-18
 Identities = 71/272 (26%), Positives = 117/272 (43%), Gaps = 31/272 (11%)

Query: 111 VLVVLVFEAARRVMGIALPIICGLFLAYGLFGEYLPGDLAHRGYGLDQIINQLSFGT--E 168
           VL++L+F        + +PI   +FL  GL G  +  D             Q++FG    
Sbjct: 13  VLMMLIF--------LRVPIGLSMFLV-GLVGLIIVTDGT-----------QVAFGRMKS 52

Query: 169 GLYGTPTYVSATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMG 228
             Y T +  S T + +F+L G F    GM       A G  GHK GG A  A+ + A  G
Sbjct: 53  ETYSTFSSYSLTIVPMFLLMGHFATLGGMSTALFKAAEGFLGHKKGGVAMAAIGACAGFG 112

Query: 229 TITGSGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETI 288
            I GS +A   T G+  +P ++ +GY   F+    A       ++PP +  V + +    
Sbjct: 113 AICGSSLATAATMGRVALPELRNYGYAGGFSTATLAAGGTLGILIPPSVVLVIYAILTEQ 172

Query: 289 NVPFVEIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWG----AVKDSWFL 344
           N+   ++  AA IP  L   ++ +++ +        G    + P  WG    A+   W +
Sbjct: 173 NI--AKLFLAAFIPGIL--AAIGYVIAISIYVRVFPGSAGTRPPVPWGERFAALFHVWPV 228

Query: 345 LIPLGVLVYLLFSG-RTPLFSGMVGLALTAIV 375
           L+  G++V  ++ G  TP     VG   T ++
Sbjct: 229 LLVFGLVVGGIYLGWFTPTEGAAVGALGTGLI 260