Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 869 a.a., TRAP transporter, 4TM/12TM fusion protein from Phaeobacter inhibens DSM 17395

 Score =  349 bits (895), Expect = e-100
 Identities = 229/682 (33%), Positives = 355/682 (52%), Gaps = 76/682 (11%)

Query: 19  LFYVALLFSIFQIVTAAFSPVSSIVL--------RAVHVGFLLWVVFLSYPAHGRQRPWQ 70
           L  VA+++S+FQ+V A  SPVS+++L        R +H+ F +++ + +YPA  +  P  
Sbjct: 38  LAIVAVIWSVFQVVLA--SPVSNLLLPGSVVNNSRQIHLAFAIFLAYAAYPAL-KSSPTD 94

Query: 71  PLA---WVLSLGGVATALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFEAARRVMGIA 127
            +    W+L+L G  TALY ++F   ++   G     D I   + +VL+FE ARR +G A
Sbjct: 95  RIPVQDWILALIGTFTALYGYIFYEKIVNSGGKGDDIDTIFAAIGLVLLFEGARRALGPA 154

Query: 128 LPIICGLFLAYGLFG--EYLPGDLAHRGYGLDQIINQLSFGTEGLYGTPTYVSATYIFLF 185
           + I+  +F+ Y  FG  E +P  +  +G  LD+ + Q+   +EG++G    VS  ++FLF
Sbjct: 155 MAIVASVFMLYVFFGSSELVPDVIRWKGASLDRAMEQMWITSEGVFGIALGVSTKFVFLF 214

Query: 186 ILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQFT 245
           +LFGA L+KAG    F   A G  GH  GGPAK AVV SA  G I+GS IANVVTTG FT
Sbjct: 215 VLFGALLDKAGAGNYFIKMAFGALGHLRGGPAKAAVVGSAATGLISGSSIANVVTTGTFT 274

Query: 246 IPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPACL 305
           IPLMKR G+ +  AG VE  SS+  QIMPPVMGA AF+M E + + +VE+   A +PA +
Sbjct: 275 IPLMKRVGFSSEQAGSVEVASSVNGQIMPPVMGAAAFLMVEYVGISYVEVITHAFLPAAI 334

Query: 306 YFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLL---FSGRTPL 362
            + ++ ++VHLEA + ++  L  ++  S    +            L Y +       T  
Sbjct: 335 SYIALVYIVHLEAVKRNMPTL-GNRVVSMGRTIGGMAAFFAGFAALCYGIQYPIKAITAA 393

Query: 363 FSGMVGLALTAIVIL---------------------GSAIILKVSNYALRCAFWIALGLL 401
             G  GL L+ +V+                       + + L V     +      L ++
Sbjct: 394 IPGASGLVLSLLVVAAYLGLLWLAAGTDDLVPDDPNAAEVELPVVGEIYKAGLHYLLPII 453

Query: 402 CVGFFRL------------GIGVVFAVI-----------GVLVVACWFMQGTRETLVICL 438
            + +F +               ++F ++           G   +A  F+ G  +      
Sbjct: 454 VLVYFLMIEQKSPGLSAFWATALLFVILLTQKPLKALFRGQSTLAHSFLDGVHD----LW 509

Query: 439 HALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTCL 498
           + L+DGAR+ + + +A A  G I+  V+LTGV    +  +  +   NL+L LI+  L  L
Sbjct: 510 NGLIDGARNMIGIALATATAGVIVGTVTLTGVGQVMSELVELMSGGNLILMLIMVGLLSL 569

Query: 499 VLGMGIPTIPNYIITSSIAAPALLELG------VPLIVSHMFVFYFGILADLTPPVALAC 552
           VLGMG+PT  NYI+ SS+ A  ++ELG      VPLI  H+FVFYFGI+AD+TPPV LA 
Sbjct: 570 VLGMGLPTTANYIVVSSLMAGVVVELGAQSGLVVPLIAVHLFVFYFGIMADVTPPVGLAS 629

Query: 553 FAAAPIARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQGDNLWMTAYML-IKTLLAV 611
           FAAA ++    ++  F A   +L    +PF+ ++N  L+L  D  W+   ++ I   +A+
Sbjct: 630 FAAAAVSGGDAIRTGFVAFFYSLRTVALPFVFIFNTDLLLI-DVGWVQGILVAISATIAI 688

Query: 612 GLWGMASTGYLQQKMPIWERLL 633
             +   +  Y   +  I+E +L
Sbjct: 689 LAFTAGTMNYFITRNRIYESVL 710