Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 491 a.a., TRAP transporter, subunit DctM from Phaeobacter inhibens DSM 17395

 Score =  116 bits (291), Expect = 2e-30
 Identities = 115/434 (26%), Positives = 186/434 (42%), Gaps = 40/434 (9%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           F+L G  + + G+     +F+  L GH  GG A+V ++SS L   ++GS +A+    G  
Sbjct: 62  FMLAGELMNRGGITVRLVEFSQALMGHLRGGLAQVNILSSILFAGLSGSAVADTSALGSM 121

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPP--VMGAVAFIMAETINVPFVEIAKAALIP 302
            IP M+R GY   FA  V A SS+   I+PP  +M   A++M E++   F+    A ++P
Sbjct: 122 LIPAMEREGYSRKFAAAVTAASSVIGPIIPPSGIMIIYAYVMGESVAALFL----AGIVP 177

Query: 303 ACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPL 362
             L    +  MV   A R +L    +    S    V + WF    + + + LL +   PL
Sbjct: 178 GVLVGVGLMIMVRAMADRYELPAARRVVFDSVEIGVMERWFSFGLVRLNLGLLLAQFVPL 237

Query: 363 FSG----MVGLALTAIVILGSAIIL---KVSNYALRCAF----------WIALGLLCVGF 405
             G    M  LA    V+    ++L   +V + A R              + LG +  G 
Sbjct: 238 AEGAGAQMKWLAFFGAVLFAHGLMLGLRRVVSPAFRTICKRAVVPLQTPVLILGGILAGV 297

Query: 406 FRLGIGVVFAVIGVLVVACWFMQGTRETLVICLHALVD----GARHAVPVGIACALVGSI 461
           F        AV   L+++          LV+    L D     +R  +   +   LVG+ 
Sbjct: 298 FTPTEAAAVAVAYALLIS---------FLVLGSMRLADLPQVFSRAGITSAVVLLLVGAA 348

Query: 462 IA---VVSLTGVASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAA 518
           ++   VVSL+      A +IL +  +N L+ L L  L   V+GM +   P  II   I  
Sbjct: 349 MSFKTVVSLSHAPEQLADFILTLS-ENPLILLFLINLLLFVVGMFLDAGPAIIILGPILG 407

Query: 519 PALLELGVPLIVSHMFVFYFGILADLTPPVALACFAAAPIARESGLKISFWAVRIALAGF 578
           P   +LGV  +   + +     +   TPP+ L  F AA +++E    I+   +       
Sbjct: 408 PVFTDLGVESVHFAIIMCVNLTVGLATPPMGLVLFVAAAVSQERVTTIAKAILPFLAIEI 467

Query: 579 VIPFMTVYNPALML 592
            + F+  + PA+ L
Sbjct: 468 AVIFLITFVPAISL 481