Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 465 a.a., dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) from Shewanella loihica PV-4

 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 108/425 (25%), Positives = 167/425 (39%), Gaps = 27/425 (6%)

Query: 173 TPTYVSATYIFLFILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITG 232
           T  + +   I  FIL  AFL   G+ +   DFAM   GH  GG A  +V++  L   ++G
Sbjct: 51  TSEHYTLLAIPFFILSSAFLSTGGVARRIIDFAMDSVGHIRGGLAMASVMACMLFAAVSG 110

Query: 233 SGIANVVTTGQFTIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPF 292
           S  A V   G   I  M R GY   FA GV  TS     ++PP    V  + A    V  
Sbjct: 111 SSPATVAAIGSIVIVGMVRAGYPEKFAAGVITTSGTLGILIPP--SIVMLVYAAATEVSA 168

Query: 293 VEIAKAALIPACLYFGSVFWMVHLEAKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLV 352
             +  A LIP  +    +   +++ A+   +K LP    P        S   +  L ++V
Sbjct: 169 ARMFMAGLIPGLMMGLLLMLAIYIVAR---IKKLPSRPFPGFRPLAISSAKAMGGLALIV 225

Query: 353 YLLFSGRTPLFSGMVGLALTAIVILGSAIILKVSNY----ALRCAFWIALGLLCVGFFRL 408
            +L S    ++ G+      A V    A  + V  Y     L+   W   G         
Sbjct: 226 IVLGS----IYGGIASPTEAAAVACVYAYFIAVFGYRDIGPLKNVSWRDSG-------EP 274

Query: 409 GIGVVFAVIGVLVVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLT 468
            I  +   +G +V+A +     +E      H + DGA+ ++ +    A       V++  
Sbjct: 275 LIRAILRNLGFMVLAVFKTPADKE----IRHVVRDGAKVSIMLLFIIANAMLFAHVLTTE 330

Query: 469 GVASTFAGYILAIGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPL 528
            +    A  I+ +G   +   LI+  L  L  G  +      +I + I  P   +LG+  
Sbjct: 331 RIPHLIAETIVGMGLP-VWGFLIIVNLLLLAAGNFMEPSAILLIMAPILFPIATQLGIDP 389

Query: 529 IVSHMFVFYFGILADLTPPVALACFAAAPI-ARESGLKISFWAVRIALAGFVIPFMTVYN 587
           I   + +     +  LTPPV L  F  A I  R  G  I      +AL  F +  +T Y 
Sbjct: 390 IHLGIIMVVNMEIGMLTPPVGLNLFVTAGITGRSMGWVIHSCIPWLALLLFFLALIT-YI 448

Query: 588 PALML 592
           P + L
Sbjct: 449 PQISL 453