Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 639 a.a., TRAP transporter, 4TM/12TM fusion protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  301 bits (772), Expect = 5e-86
 Identities = 191/577 (33%), Positives = 290/577 (50%), Gaps = 46/577 (7%)

Query: 22  VALLFSIFQIVTAAFSPVSSIVLRAVHVGFLLWVVFLSYPAHGRQRPWQPLAWVLSLGGV 81
           ++LL  IF   T+ F    +++ RA  V  ++ +  L YP  G+ R  +PL  VL L  V
Sbjct: 29  LSLLIGIFVFYTSFFGAFETLIQRAGFVAMIVTMAVLLYPTAGKTR-LRPLGIVLDLAMV 87

Query: 82  A----TALYQWVFESDLIQRSGDLTTTDMIMGIVLVVLVFEAARRVMGIALPIICGLFLA 137
                +A+Y       ++         D  +G   ++++ E ARR   +  PII G  +A
Sbjct: 88  GWVAVSAVYVIANFERIMVELPFAEPIDAWLGFGTLLVILELARRTASVVFPIIVGGMVA 147

Query: 138 YGLFGEYLPGDLAHRGYGLDQIINQLSFGTEGLYGTPTYVSATYIFLFILFGAFLEKAGM 197
           Y  FG+ +PG   HRG+G+  I   +     GL+G    +++T +  FILFGA L   G 
Sbjct: 148 YAFFGDAIPGSFGHRGFGIYYITEVMFLSDRGLWGMLVSIASTTLAAFILFGALLLHTGA 207

Query: 198 IKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQFTIPLMKRFGYKAA 257
            + F D +    G   GG AK+A ++S L G+I+GS +AN+ TTG FTIPLMKR  Y A 
Sbjct: 208 GQTFFDLSARAGGASPGGAAKIATIASGLFGSISGSSVANIATTGNFTIPLMKRLRYPAP 267

Query: 258 FAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPACLYFGSVFWMVHLE 317
           FAGGVEA +S G Q+ PP+MG  AF+MAE + V +  I   A +PA L++  VF  VHL 
Sbjct: 268 FAGGVEAVASTGGQLAPPIMGTAAFVMAELVGVNYWTIVAVAFLPALLFYIGVFTTVHLV 327

Query: 318 AKRSDLKGLPKDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRTPLFSGMVGLALTAIVIL 377
           AKR+ L  +     P  W A  D W  L               P+ +G+ GLA    +  
Sbjct: 328 AKRTGLGQVDAADLPD-WRAALD-WRRL--------------APILAGIAGLAWG--IWN 369

Query: 378 GSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVLVVACWFMQGTRETLVIC 437
           G++I L                  C G   +GI V + V  +     W      E +   
Sbjct: 370 GNSIQLTA----------------CYGM--IGIMVAYTVATLTGGGTW-----AEVIATL 406

Query: 438 LHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILAIGRDNLLLSLILTMLTC 497
           + A  DG +  V VGI        +A+V+LTGV       ILA   D++ L  ++    C
Sbjct: 407 IRAFRDGGKGVVIVGILLVAAQVFVAMVNLTGVGVAITSQILAFAGDSIWLIAVIMAGVC 466

Query: 498 LVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILADLTPPVALACFAAAP 557
           L+ GMG+PT   Y++ +++ AP L++ G+  ++ H+FV Y+  L+ +TPPV +A F A+ 
Sbjct: 467 LIAGMGLPTSAAYVLVAAVFAPVLIQQGLDPVMVHLFVLYYAALSVITPPVCVAVFVAST 526

Query: 558 IARESGLKISFWAVRIALAGFVIPFMTVYNPALMLQG 594
           IA+   L ++   +R+    + +P + +  P L+L G
Sbjct: 527 IAQAPWLAVARDTLRLGGTAYALPMLFIAYPGLLLAG 563