Pairwise Alignments

Query, 675 a.a., TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1 from Pseudomonas fluorescens FW300-N2E2

Subject, 465 a.a., TRAP dicarboxylate transporter, DctM subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 91/382 (23%), Positives = 146/382 (38%), Gaps = 25/382 (6%)

Query: 185 FILFGAFLEKAGMIKLFTDFAMGLFGHKLGGPAKVAVVSSALMGTITGSGIANVVTTGQF 244
           FIL  AFL   G+ +   DFAM   GH  GG A  +V++  L   ++GS  A V   G  
Sbjct: 63  FILSSAFLSTGGVARRIIDFAMDSIGHIRGGLAMASVMACMLFAAVSGSSPATVAAIGSI 122

Query: 245 TIPLMKRFGYKAAFAGGVEATSSMGSQIMPPVMGAVAFIMAETINVPFVEIAKAALIPAC 304
            I  M + GY   FA GV  TS     ++PP    V  + A    V    +  A LIP  
Sbjct: 123 VIVGMVKAGYPEKFAAGVITTSGTLGILIPP--SIVMLVYAAATEVSAARMFMAGLIPGL 180

Query: 305 LYFGSVFWMVHLEAKRSDLKGLP----KDQCPSAWGAVKDSWFLLIPLGVLVYLLFSGRT 360
           +    +  ++++ A+  +L   P    K    S+  A+     ++I LG +   + S   
Sbjct: 181 MMGFLLMIVIYIVARFKNLPSRPFPGFKQLGISSAKALGGLALIIIVLGSIYGGVASPTE 240

Query: 361 PLFSGMVGLALTAIVILGSAIILKVSNYALRCAFWIALGLLCVGFFRLGIGVVFAVIGVL 420
              S +  +    I + G   I  + N A R         +      + +G++   I   
Sbjct: 241 A--SAVACMYAYFIAVFGYRDIGPLKNVAWRNPNEPIPSAIVRNLGHMALGLIKTPIDKE 298

Query: 421 VVACWFMQGTRETLVICLHALVDGARHAVPVGIACALVGSIIAVVSLTGVASTFAGYILA 480
           +                 H + DGA+ ++ +    A       V++   +    A +I+ 
Sbjct: 299 I----------------RHVVRDGAKVSIMLLFIIANAMLFAHVLTTERIPHIIAEHIVG 342

Query: 481 IGRDNLLLSLILTMLTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGI 540
           +G       LI+  L  L  G  +      +I + I  P    LG+  I   + +     
Sbjct: 343 MGLPAWGF-LIIVNLLLLAAGNFMEPSAIVLIMAPILFPIATHLGIDPIHLGIIMVVNME 401

Query: 541 LADLTPPVALACFAAAPIARES 562
           +  LTPPV L  F  A I   S
Sbjct: 402 IGMLTPPVGLNLFVTAGITGRS 423