Pairwise Alignments

Query, 382 a.a., Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) from Pseudomonas fluorescens FW300-N2E2

Subject, 373 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  397 bits (1020), Expect = e-115
 Identities = 195/356 (54%), Positives = 253/356 (71%), Gaps = 1/356 (0%)

Query: 4   STVKTNLLGLTQPEMEKFFDSIGEKRFRAGQVMKWIHHFGVDDFDAMTNVGKALREKLKA 63
           S  K NLL L +  +   F  +GEK FRA Q+MKW++HFGV DF+ MTN+ K LR KL A
Sbjct: 2   SEKKINLLDLDRKGLRALFTEMGEKPFRADQLMKWLYHFGVSDFEQMTNINKVLRAKLAA 61

Query: 64  VAEIRGPEVVSQDISSDGTRKWVVRVASGSCVETVYIPQGKRGTLCVSSQAGCALDCSFC 123
             E+  PE+ S   S+DGT K+ + V +G  VETVYIP+  R TLCVSSQ GCAL+C+FC
Sbjct: 62  RCEVVAPEISSYQKSADGTIKFAINVGNGQEVETVYIPEEDRATLCVSSQVGCALECTFC 121

Query: 124 STGKQGFNSNLTAAEVIGQVWIANKSFGSVPATVDRAITNVVMMGMGEPLLNFDNVVSAM 183
           ST +QGFN NLT +E++GQ+W  +   G    T +R I+NVVMMGMGEPLLN  NV+ A+
Sbjct: 122 STAQQGFNRNLTVSEIVGQIWRVSHFLGFQKETGERPISNVVMMGMGEPLLNLKNVMPAI 181

Query: 184 HLMMDDLGYGISKRRVTLSTSGVVPMIDELAKHIDVSLALSLHAPNDALRNQLVPINKKY 243
            +M+DD G+ +SKRRVT+STSGVVP +D L  ++DV+LA+S+HAPND LR+ LVP+NKKY
Sbjct: 182 DIMLDDFGFSLSKRRVTVSTSGVVPALDILGDNLDVALAVSIHAPNDELRDVLVPVNKKY 241

Query: 244 PLKMLLESCQRYMSSLGEKR-VLTIEYTLLKDVNDKVEHAVEMIELLKNIPCKINLIPFN 302
           PL+  L + +RY++     R  +T+EY +L  +ND  + A E+ EL+K+ PCKINLIPFN
Sbjct: 242 PLQEFLAAIRRYLAKSNANRGRVTLEYVMLDHINDSTDQAHELAELMKDTPCKINLIPFN 301

Query: 303 PFPHSGYERPSNNAIRRFQDQLHHAGFNVTVRTTRGEDIDAACGQLVGQVLDRTRR 358
           P+P S Y R SN+ I RF   L   G  V VR TRG+DIDAACGQL G + DRT+R
Sbjct: 302 PYPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKR 357