Pairwise Alignments

Query, 298 a.a., Tyrosine recombinase XerD from Pseudomonas fluorescens FW300-N2E2

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  360 bits (925), Expect = e-104
 Identities = 182/292 (62%), Positives = 225/292 (77%)

Query: 7   PLIDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQ 66
           PLI+ FLD LW  KGLSD+T  AYRSDL+ F+ +L +    L++  +  + D+LA R+E 
Sbjct: 12  PLIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEH 71

Query: 67  NYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAP 126
            +   S+AR LS LR FY+YLL +KLI VDP   ++ P+L R LP +LSEADV+ LL+ P
Sbjct: 72  GFAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEP 131

Query: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186
           +  + +  RDRAMLE+LYA GLRV+EL+ LTL+Q++LRQGV+R++GKGSKERLVP GE+A
Sbjct: 132 NREDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQA 191

Query: 187 IVWVERYMRDARHELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPHTL 246
              +E Y++ AR ELL G+ SDV+FPS RG  MTRQTFWHRIK  A+ AGI   LSPHTL
Sbjct: 192 GAEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIAVHLSPHTL 251

Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPRG 298
           RHAFATHLLNHGADLRVVQ+LLGHSDLSTTQIYTHVA+ARL  LH  HHPRG
Sbjct: 252 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPRG 303