Pairwise Alignments

Query, 298 a.a., Tyrosine recombinase XerD from Pseudomonas fluorescens FW300-N2E2

Subject, 294 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  231 bits (589), Expect = 2e-65
 Identities = 123/289 (42%), Positives = 180/289 (62%), Gaps = 2/289 (0%)

Query: 9   IDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQNY 68
           +D++L+ L +E+GL++NT  AY +DL     +L+E    L     + +  H+     +  
Sbjct: 1   MDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGM 60

Query: 69  KPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAPDL 128
             R+ AR L+ LRGF+ + + E  +  DP L +E P+L R LP  L+  ++  +LA PDL
Sbjct: 61  AGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDL 120

Query: 129 SEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEAIV 188
           S+ +G RDR MLE++YA GLRV+EL +L     + + GV+RV GKG+KER+VP+   +  
Sbjct: 121 SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCA 180

Query: 189 WVERYMRDARHELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPHTLRH 248
            V  Y+RD R       P+  +F +  G+ ++RQ  W  +K     AGI+K +SPHT RH
Sbjct: 181 LVTAYLRDWRPAFSPVEPA--MFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRH 238

Query: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297
           +FATHLL  GADLR VQ+LLGH+D+S T+IYTHV   RL+ +H  HHPR
Sbjct: 239 SFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPR 287