Pairwise Alignments

Query, 456 a.a., virulence sensor protein from Pseudomonas fluorescens FW300-N2E2

Subject, 1689 a.a., sensory transduction histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 89.0 bits (219), Expect = 1e-21
 Identities = 85/343 (24%), Positives = 153/343 (44%), Gaps = 19/343 (5%)

Query: 47  LDAQELKWIKENPRVIVATMQFPLYL-FKNELGQWNGLNHDILQRISQMTGLEFVHRESF 105
           L   EL +++++P + V        + + ++ G+  GL    L  I+++  + F  + + 
Sbjct: 415 LTEPELNFLRQHPSIRVGIEPDGAPIDYVDQAGKHTGLIASYLSEIAKLIPVRFEVQPTQ 474

Query: 106 SPGELLTMLENSEADMTTLLAMNDERRDFLSFSHAFGGSGWVFVGRDGESILHSLEQLEG 165
           S G+ L      + DM +L++ +++R+  + F+ A G    V V R    ++  +E L G
Sbjct: 475 SWGQTLKDFAADKLDMISLISASEDRKQRILFTDAIGHFPAVIVMRKDAELVDGIEGLFG 534

Query: 166 KVLALPARHALEAEIRRDYPAIKLRTTKTYGE--ARALVESREAYATIENETGVHLY-PA 222
           K +A+      E  +R+ YP I +       +  +  L    +A   +  + G  L  PA
Sbjct: 535 KTVAVTRGDITEELLRKKYPEINIIAFDRLEDVLSTTLASQVDAAVMLLPKAGQSLLSPA 594

Query: 223 G-QLQVGRGLEGKWEPDYLAVRQDLAVLLSILNKALEAFPAKDMRALRSKWMA-----GS 276
             +L +   L+ ++E   + VR+D   L SILNKAL   P+     L S+W       G 
Sbjct: 595 NKELTIVAPLDDEFEHS-IGVRRDWPELQSILNKALAQIPSSTRAELDSRWFTVKYDFGM 653

Query: 277 TPAPAPSIWERFSRWGYWCVTVVVVFGLLSLLWNRRLQIQIDQRLKAEAVLKDQLMLQRA 336
            P       ++  RW      V++      +LWN  L+ ++ +R +  A L+  +    A
Sbjct: 654 DP-------QQIKRWAISSAMVILGLFACFILWNYGLKRELLRRSRMAAQLESSMNKFHA 706

Query: 337 LMDAIPDPIFIRDLEGRLVMCNKSYEDQLATRFE-KLRGTRLT 378
           L D++ D   I D  G +  CN + +  L    +  L GT LT
Sbjct: 707 LFDSVMDACVIIDKRGVIKECNAALQTLLGVEDKTALVGTSLT 749