Pairwise Alignments

Query, 260 a.a., Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 271 a.a., polyamine ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  142 bits (357), Expect = 1e-38
 Identities = 84/258 (32%), Positives = 149/258 (57%), Gaps = 11/258 (4%)

Query: 3   IAAWGGLVFLHFPILIIFLYAFNTEDAAFSFPPKGLTLKWFSVAFSRPDVLEAIKLSLQV 62
           +  W GL+FL+ P+LI+ +Y+FN       +   G + KW+   F    +L+A+  SL++
Sbjct: 9   VMLWFGLLFLYAPMLILVIYSFNESKLVTVWG--GFSPKWYGELFKDQQILDAVWTSLRI 66

Query: 63  AAIATLIAMVLGTLASAALYR-RDFFGKQGISLMLILPIALPGIITGIALLATFKTLGI- 120
           A  ++ +A+++GT+A+  + R +  + K  +S M+  P+ +P +ITG++LL  F  +   
Sbjct: 67  AFYSSTMAVIIGTMAAFVMTRFKRSWAKLTLSNMITAPLVMPEVITGLSLLLLFVHMADL 126

Query: 121 -----EPGMFTIVVGHATFCVVIVYNNVIARLRRTSHSLIEASMDLGADGWQTFRYIILP 175
                E GM T+ + H+TFC   V   V +RLR    S+ EA+MDLGA   +TF  I +P
Sbjct: 127 LGWPKERGMVTVWIAHSTFCAAYVAVVVSSRLRELDRSIEEAAMDLGATPLKTFFLITVP 186

Query: 176 NLGSALLAGGMLAFALSFDEIIVTTFTAG-HERTLPLWLLNQLSRPRDVPVTNVVAMLVM 234
            +  AL+AG +L+F+LS D++++++F +G    TLP+ + + + R    P  N +A L++
Sbjct: 187 MISPALVAGWLLSFSLSLDDLVISSFASGPGATTLPMVVFSSV-RLGVSPKINALATLII 245

Query: 235 IVTMLPILGAYYLTRGGE 252
           +   L    ++Y+ R  E
Sbjct: 246 LCVSLIAFLSWYMARRAE 263