Pairwise Alignments

Query, 315 a.a., Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) from Pseudomonas fluorescens FW300-N2E2

Subject, 296 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  138 bits (348), Expect = 1e-37
 Identities = 95/312 (30%), Positives = 163/312 (52%), Gaps = 35/312 (11%)

Query: 3   TLAIAQTPAPGSPLRRFSNLLYRRPNLYLSMLLVPPLI---WFGAIY-LGSLLTLLWQGF 58
           T ++A  P   S  RR S+  +  P    SM LV PL+     G +Y +  L+ L + G 
Sbjct: 2   TRSLASLPHSVS-FRRSSSARFYSP--IASMALVTPLLAAMLAGFLYPVARLIALSFSGG 58

Query: 59  YTFDDFTMAVTPDLTLANFAALF-QPSNFDIILRTLSMAIAVSIASAIVAFPIAYYMARY 117
                         T +++  +F +P + +++  T+ +A  V++A  ++ FP+AY MAR 
Sbjct: 59  --------------TFSHYRRIFTEPLHLEVLFSTIEVAFVVTVAGLLLGFPVAYLMARL 104

Query: 118 TSGKTKAFFYIAVMLPMWASYIVKAYAWTLLLAKGGVAQWFVQHLGLGPVLQFVLGIPGV 177
           + G   A     V +P+W S ++++YAW +LL + G+    +   G   V +  L +   
Sbjct: 105 SRGLAMAVA-ACVFVPLWTSVLIRSYAWVVLLQRNGIVNKLLADTG---VTEGPLKLIYT 160

Query: 178 GGSTLSTSHLGRFLVFVYIWLPFMILPIQASLERLPPSLLQASADLGARPHQTFMQVILP 237
            G+ +        L   ++ +PFMILPI ++L  LPP  ++A+ +LGA P + F+ V LP
Sbjct: 161 QGAVI--------LAMTHVLMPFMILPIYSALRALPPDYVRAARNLGAGPIRAFVTVTLP 212

Query: 238 LSIPGIAAGSIFTFSLTLGDFIVPQLV-GPPGYFVGSMVYAQQGAIGNMPMAAAFTLVPI 296
           LS+PGI AGS+  F L LG +I P LV GP    + +++  Q   + + P AAA + V +
Sbjct: 213 LSLPGIFAGSVMCFVLALGFYITPALVGGPSSMLMATLIGQQTTVLLDWPFAAALSTVLL 272

Query: 297 VLIAIYLSIVKR 308
            +  +++ + +R
Sbjct: 273 AVTLLFVLMFRR 284