Pairwise Alignments

Query, 178 a.a., Chemotaxis signal transduction protein from Pseudomonas fluorescens FW300-N2E2

Subject, 170 a.a., purine-binding chemotaxis protein CheW (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 53.1 bits (126), Expect = 2e-12
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 23/177 (12%)

Query: 4   LETRRGAAPTARQSL-----FLVFCIGNERYALQAIDVVEVLPRLPLKPIARAPSWVAGV 58
           +++R   AP    S      FL F +G E YAL  + V E+    P+  IA APS++ GV
Sbjct: 1   MDSRASLAPKPEFSAHDEVEFLSFVLGEEHYALDIMSVKEIRGYEPVTKIANAPSFIKGV 60

Query: 59  FAWRGTVVPVIDLCALTFGQSAEARTSTRLVLVRYQGDAQQTGQVLGLILEQATDTVRCD 118
              RG +VP++DL  + F           +V++    D     +++G++++  +D ++  
Sbjct: 61  LNLRGDIVPIVDL-RMKFNVGTVTYDEFTIVIMLNVCD-----RIVGIVVDAVSDVIKLS 114

Query: 119 PADFKPYGLDNRQAPYLGPVREDAQGLLQWVRVNDLLDESVRALLFPAPPLDLDDLG 175
                P       AP  G   +      ++++    +DE +  L+     +  DDLG
Sbjct: 115 SEAILP-------APEFGAAFDS-----RYLKGLATVDEKMVILVNIQALISSDDLG 159