Pairwise Alignments

Query, 383 a.a., N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) from Pseudomonas fluorescens FW300-N2E2

Subject, 404 a.a., succinyl-diaminopimelate desuccinylase (NCBI) from Rhodospirillum rubrum S1H

 Score =  270 bits (689), Expect = 7e-77
 Identities = 166/392 (42%), Positives = 221/392 (56%), Gaps = 22/392 (5%)

Query: 5   ADLSPTLQLACDLIRRPSVTPVDADCQKLMMQRLGNAGFTLEPMRI-----EDVDNFWAS 59
           A+L+  L LA  L+  PSVTP DA    ++   L   GF    +       E VDN +A 
Sbjct: 11  AELADPLALARALVACPSVTPRDAGALDVLESALIALGFRCVRLPFGAEGGERVDNLYAR 70

Query: 60  HGKHDGPVLCFAGHTDVVPTGPVQAWQLDPFDAVIDEHGMLCGRGAADMKGSLAAMIVAA 119
            G   GP   FAGHTDVVP G    W   PF A + + G L GRGAADMKG +A  + A 
Sbjct: 71  RGGA-GPCFGFAGHTDVVPAG--DGWSRPPFGAEVVD-GALVGRGAADMKGGIACFVAAV 126

Query: 120 ERFVA--------DYPDHKGSLTFLITSDEEGPAHHGTKAVIERLKARQERLDWCIVGEP 171
            R ++           D  GS+  LIT DEEGPA HGT+ V+E ++   ER+D C+VGEP
Sbjct: 127 ARLISGPDSTGSISRHDPTGSIALLITGDEEGPALHGTRKVLEWMEGAGERMDLCLVGEP 186

Query: 172 SSTTLVGDVVKNGRRGSLGAKLTVRGKQGHVAYPHLAKNPIHLAAPALAELAAEHWDHGN 231
           ++   +GD++K GRRGSL A +T+ G+ GHVAYPHLA NP+H  +     L AE  D G 
Sbjct: 187 TNPEGLGDMIKIGRRGSLTATVTLLGRAGHVAYPHLADNPLHRLSTLTGLLLAETLDDGT 246

Query: 232 DFFPPTSFQISNLNAGTGATNVIPGDLVAVFNFRF----STESTVEGLQQRVADILDKHQ 287
             F P+S Q+++++ G  A NVIP      FN RF    S ES    ++ R     D  +
Sbjct: 247 AHFQPSSLQLTSIDVGNPAANVIPAKATLRFNIRFNDRHSGESLSAWIRARCLAACDGDE 306

Query: 288 LDWHIDWALSGLPFLTEPGALLDAVSSSIKDVTGRETQASTSGGTSDGRFIATMGTQVVE 347
             + +    SG  FLT PG L D ++++ + VTGR  + STSGGTSD RFI +    V E
Sbjct: 307 SGFSLVLEHSGDAFLTPPGPLSDLIATACQAVTGRRPELSTSGGTSDARFIRS-HCPVAE 365

Query: 348 LGPVNATIHQVNERVLAADLDVLTEIYYKTLI 379
            G V  T+H+ +ERV  ADL+ L+EIY + L+
Sbjct: 366 FGLVGRTMHKPDERVAVADLEALSEIYRRVLV 397