Pairwise Alignments

Query, 859 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens FW300-N2E2

Subject, 870 a.a., DNA mismatch repair protein MutS from Pedobacter sp. GW460-11-11-14-LB5

 Score =  557 bits (1436), Expect = e-163
 Identities = 321/863 (37%), Positives = 510/863 (59%), Gaps = 28/863 (3%)

Query: 7   DLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSA-GM 65
           D +  TP+MQQY  +K ++P  L+ +R+GDFYE F EDA K A++L I LT RG    G 
Sbjct: 4   DTNKETPLMQQYNAIKAKYPGALLLFRVGDFYETFGEDAIKTAQILGIVLTRRGTGPNGG 63

Query: 66  AIPMCGIPYHAAEGYLAKLVKLGESVVICEQVGDPATSKGPVERQVVRIITPGTVSDEAL 125
           A+ + G P+H+ + YL+KLV+ G+ V IC+Q+ DP T+K  V+R V  ++TPG    + +
Sbjct: 64  ALELAGFPHHSLDNYLSKLVRAGQRVAICDQLEDPKTTKTIVKRGVTELVTPGVAYGDNI 123

Query: 126 LDERRDNLIAAVLGDERLFGLAVLDITSGNFSVLEIKGWENLLAELERVNPVELLIPDDW 185
           ++++ +N +A V  D+   G++ LDI++G F + +    + +   L+   P E++     
Sbjct: 124 VNQKSNNFLACVFFDKTQLGVSFLDISTGEFLIAQGNS-DYIDKLLQGFKPTEVIFQKS- 181

Query: 186 PKDLPAEKRRGVRRRA----PWDFERDSALKSLCQQFSTQDLKGFGCENLTLAIGAAGCL 241
            K     +  G R        W F  D   ++L + F    LKGFG E L   I AAG +
Sbjct: 182 -KRQAFTENFGDRFYTFGLDEWPFTSDFGNETLMKHFEVSSLKGFGVERLQSGIVAAGVI 240

Query: 242 LAYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRCQT 301
           L Y  ET+   L H+ S+     D  + LD  + RNLEL  N       TL  ++D   T
Sbjct: 241 LHYLGETEHRNLQHISSIGRIEEDRYMWLDRFTIRNLEL-VNSPNDNAVTLFDILDHTCT 299

Query: 302 AMGSRLLTRWLNRPLRDLTVLLARQSSITCLLDRYRFEQLQPQ----LKEIGDIERILAR 357
            MG+RLL +W+  PL++L  +  R   +   +   + E+LQ +    +K+IGD+ER++++
Sbjct: 300 PMGARLLQKWIIMPLKELKPIQERLGMVEYFV---KHEELQGEFLSNIKQIGDLERLISK 356

Query: 358 IGLRNARPRDLARLRDALGALPELQVAMTGLEAPHLQQLARTTSTYPELAALLEKAIIDN 417
           +GL+   PR+L  L+ AL  +  ++      + P L ++A   +    +   +E+ +  +
Sbjct: 357 VGLQRVGPRELVALKRALYHIEAVKKLAADSKNPFLIKIADQLNPCLAIRERIERELQPD 416

Query: 418 PPAVIRDGGVLKTGYDAELDELQALSENAGQFLIDLEAREKARTGLANLKVGYNRIHGYF 477
           PPA++  G V+  G D +LD L+ ++     +L+ ++ RE   TG+ +LK+ +N + GY+
Sbjct: 417 PPALLIKGNVIADGIDEDLDRLRKIAFGGKDYLVQIQKREAEATGIPSLKIAFNNVFGYY 476

Query: 478 IELPSKQAEQAPADYVRRQTLKGAERFITPELKAFEDKALSAKSRALAREKMLYEALLED 537
           +E+     ++ PA ++R+QTL  AER+ITPELK +ED+ L A+ +  A E  LY  L+ +
Sbjct: 477 LEVTHTHKDKVPAGWIRKQTLVNAERYITPELKEYEDQILGAEEKIQAIEIRLYNELMYE 536

Query: 538 LISQLPPLQDTAGALAELDVLSNLAERALNLDLNCPRFVSEPCMRISQGRHPVVEQVLTT 597
             S + P+Q  +  +A+LD L   A+ A     N P+      + I  GRHPV+E+ L  
Sbjct: 537 TASYIKPIQLDSFLIAQLDCLLCFAQLAAKNHYNKPKVTENKVLDIKGGRHPVIEKQLPV 596

Query: 598 --PFVANDLSLD-DNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASCELSLVD 654
              ++ ND+ LD D+ ++++ITGPNM GKS  +RQTALIVL+A +GSFVPA   E+ +VD
Sbjct: 597 GQEYITNDVYLDTDSQQIIMITGPNMAGKSAILRQTALIVLMAQMGSFVPAKDAEVGIVD 656

Query: 655 RIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGLSLAWAA 714
           +IFTR+G+SD+++ G STFMVEM+ETA+IL+N ++ SL+L+DE+GRGTST+DG+S+AWA 
Sbjct: 657 KIFTRVGASDNISSGESTFMVEMNETASILNNISDDSLILLDEIGRGTSTYDGISIAWAI 716

Query: 715 AERLAH---LRAYTLFATHYFELTVLPESQPLVANVHLNATEHNERIVFLHHVLPGPASQ 771
           AE L      R  TLFATHY EL  L  + P + N +++  E   +++FL  ++PG +  
Sbjct: 717 AEFLHQHPTARPKTLFATHYHELNELANTMPRIKNFNVSVKEMTNKVIFLRKLVPGGSEH 776

Query: 772 SYGLAVAQLAGVPSEVITRAREHLSRLETTSLPHEAPRPT-KGKPTAPQQSDLFASLPHP 830
           S+G+ VA++AG+P+++I RA E L +LE      ++ + + K       Q  +FA +  P
Sbjct: 777 SFGIHVAKMAGMPTKLIGRANEILKKLEIDRTEGQSIKDSIKKVQNQAYQLQMFA-IDDP 835

Query: 831 VL----DELAKLDLDDLTPRRAL 849
           VL    D L  LD++ LTP  AL
Sbjct: 836 VLVKIRDTLNNLDVNALTPVEAL 858