Pairwise Alignments

Query, 859 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens FW300-N2E2

Subject, 894 a.a., DNA mismatch repair protein MutS from Burkholderia phytofirmans PsJN

 Score =  847 bits (2187), Expect = 0.0
 Identities = 472/887 (53%), Positives = 587/887 (66%), Gaps = 45/887 (5%)

Query: 4   AVNDLSSHTPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSA 63
           A ND++ HTPMMQQY R+K  HP  L+FYRMGDFYE+F+EDA+KAA+LLD+TLT RG SA
Sbjct: 7   AANDVAQHTPMMQQYLRIKADHPGTLVFYRMGDFYELFFEDAEKAARLLDLTLTQRGASA 66

Query: 64  GMAIPMCGIPYHAAEGYLAKLVKLGESVVICEQVGDPATSKGPVERQVVRIITPGTVSDE 123
           G  I M G+P+HA E YLAKLVKLGESV ICEQ+GDPATSKGPVER+VVR++TPGT++D 
Sbjct: 67  GNPIKMAGVPHHAVEQYLAKLVKLGESVAICEQIGDPATSKGPVERKVVRVVTPGTLTDA 126

Query: 124 ALLDERRDNLIAAVL------GDERLFGLAVLDITSGNFSVLEIKGWENLLAELERVNPV 177
           ALL ++ D  + A+       G     GLA L++ SG   + E+   + + A LER+ P 
Sbjct: 127 ALLSDKSDVYLLAMCVAHNRRGVATSVGLAWLNLASGALRLAEVAP-DQVAAALERIRPA 185

Query: 178 ELLI---PDDWPKDLPAEKRRGVRRRAPWDFERDSALKSLCQQFSTQDLKGFGCENLTLA 234
           E+L+   P D     P      + R   W F+  S  + LC Q     L GFG  +LT A
Sbjct: 186 EILVADTPSDSASWTPPVNAGALTRVPVWHFDVTSGTQRLCDQLEVAGLDGFGAHSLTCA 245

Query: 235 IGAAGCLLAYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQS 294
            GAAG LL YA  TQ   L H+RSL+ E   + + LD A+RRNLEL   L G    TL S
Sbjct: 246 CGAAGALLLYAAATQGQQLRHVRSLKVEYESEYIGLDPATRRNLELTETLRGTESPTLCS 305

Query: 295 VVDRCQTAMGSRLLTRWLNRPLRDLTVLLARQSSITCLLDR---YRFEQLQPQLKEIGDI 351
           ++D C T MGSRLL  WL+ P R+  V  ARQ +I  LLD       + L+  L++I DI
Sbjct: 306 LLDTCCTTMGSRLLRHWLHHPPRESAVAQARQQAIGALLDAPPGASIDSLRGALRQISDI 365

Query: 352 ERILARIGLRNARPRDLARLRDALGALPELQVAMTGLEAPHLQQLARTTSTYPELAA--- 408
           ERI  R+ L +ARPRDL+ LRD   ALPEL+  +  + AP+   LAR  ++     A   
Sbjct: 366 ERITGRLALLSARPRDLSSLRDTFIALPELRTQVAAV-APNADSLARIDASLEPPQACVE 424

Query: 409 LLEKAIIDNPPAVIRDGGVLKTGYDAELDELQALSENAGQFLIDLEAREKARTGLANLKV 468
           LL++A+   P A++RDGGV+  GYDAELDEL+ +SEN GQFLIDLE RE+ARTG+ NL+V
Sbjct: 425 LLKRAVAQEPSAMVRDGGVIARGYDAELDELRDISENCGQFLIDLETRERARTGIGNLRV 484

Query: 469 GYNRIHGYFIELPSKQAEQAPADYVRRQTLKGAERFITPELKAFEDKALSAKSRALAREK 528
            YN++HG++IE+   Q ++ P DY RRQTLK AER+ITPELK FEDKALSA+ RALARE+
Sbjct: 485 EYNKVHGFYIEVTRGQTDKVPDDYRRRQTLKNAERYITPELKTFEDKALSAQERALARER 544

Query: 529 MLYEALLEDLISQLPPLQDTAGALAELDVLSNLAERALNLDLNCPRFVSEPCMRISQGRH 588
            LY+ALL+ L+  +P  Q  A ALAELD+L+   ERA  LD   P F +   + I QGRH
Sbjct: 545 SLYDALLQALLPFIPDCQRVASALAELDLLAAFGERARALDWVAPTFSANAGIEIEQGRH 604

Query: 589 PVVEQVLTTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAASC 648
           PVVE      F+AND SL    ++L+ITGPNMGGKST+MRQTALI LLA++GS+VPA   
Sbjct: 605 PVVE-AQVEQFIANDCSLTPERKLLLITGPNMGGKSTFMRQTALIALLAYVGSYVPARRA 663

Query: 649 ELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDGL 708
               +DRIFTRIG++DDLAGGRSTFMVEM+E A IL++AT +SLVLMDE+GRGTSTFDGL
Sbjct: 664 AFGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILNDATPQSLVLMDEIGRGTSTFDGL 723

Query: 709 SLAWAAAER-LAHLRAYTLFATHYFELTVLPESQPLVANVHLNATEHNERIVFLHHVLPG 767
           +LAWA A   LAH   +TLFATHYFELT LP   P  ANVHL+A EH   IVFLH V  G
Sbjct: 724 ALAWAIARHLLAHNGCHTLFATHYFELTQLPAEFPQAANVHLSAVEHGHGIVFLHAVSEG 783

Query: 768 PASQSYGLAVAQLAGVPSEVITRAREHLSRLETTSLPHEAP------------------- 808
           PA+QSYGL VAQLAGVP+ VI  AR+HL+ LE  S    AP                   
Sbjct: 784 PANQSYGLQVAQLAGVPNAVIRAARKHLAHLEQQSAAQPAPQLDLFATPMPMLLEDADDE 843

Query: 809 RPTKGKPTAPQQSDLFASLPHPVLDELAKLDLDDLTPRRALDLLYTL 855
           R  K +P  P            +++ L  +D +DL PR ALDLLY L
Sbjct: 844 RDAKAEPAVPPAM-------QELVERLRGIDPNDLRPREALDLLYEL 883