Pairwise Alignments

Query, 328 a.a., LysR family transcriptional regulator PA3398 from Pseudomonas fluorescens FW300-N2E2

Subject, 299 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  206 bits (524), Expect = 6e-58
 Identities = 118/295 (40%), Positives = 167/295 (56%), Gaps = 5/295 (1%)

Query: 21  MRFTLRQLQVFVAVAQQESVSRAAGQLNLSQSAASTSITELERQSSCQLFDRAGKRLSLN 80
           MR TLRQL VF AVA+   V++AA Q+NLS  A S ++ ELE+Q + +LF+R G RL LN
Sbjct: 1   MRITLRQLAVFEAVARSGQVAKAAEQVNLSPPATSMALAELEKQLNARLFERIGNRLQLN 60

Query: 81  ALGKQLLPQAVALLDQAKEIEDLLNGKSG--FGSLAVGATLTIGNYLATLLIGGFMQRHP 138
           + G  LLP A  LL + ++IE     + G   G L+V A+ TIGNYL       F Q+H 
Sbjct: 61  SQGNLLLPLAADLLHRVEQIEQAFTPQGGDLVGQLSVSASSTIGNYLLAKAAVAFCQQHT 120

Query: 139 ESQVKLHVQNTANIVHQVAHYEIDLGLIEGDCSHPDIEVQSWVEDELVVFCAPQHPLAKR 198
           ++ V++ + NT +++  VA +  ++G IEG C+   + ++ W +D L+VFC P HPLA  
Sbjct: 121 QTHVEVAITNTQDVIQSVAQFRAEMGFIEGHCTDNRLHIEPWHKDRLLVFCHPAHPLA-- 178

Query: 199 GQATME-ELTHEAWILREQGSGTRLTFDQAMRHHRSALNIRLELEHTEAIKRAVESGLGI 257
           GQ      +  ++W+LRE+GSGTR  F  A          +      +AIK AV+ G G+
Sbjct: 179 GQTVKSFAVKGQSWVLREEGSGTREYFVNAANELGMQPESKFCFTTPDAIKLAVKQGAGL 238

Query: 258 GCISRLALRDAFRRGSLVAVETPDMDLARQFYFIWHKQKYQTSAMREFLELCRAF 312
           G +S LAL     R  L  V    + L RQFY I HK +  TS    F++ C  F
Sbjct: 239 GVLSELALEKEISRKELALVTIEGLVLERQFYRITHKSRQATSLGLAFVQFCSNF 293