Pairwise Alignments

Query, 1303 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N2E2

Subject, 1309 a.a., ATP-dependent RNA helicase HrpA from Vibrio cholerae E7946 ATCC 55056

 Score = 1211 bits (3132), Expect = 0.0
 Identities = 652/1305 (49%), Positives = 862/1305 (66%), Gaps = 31/1305 (2%)

Query: 4    QAPAIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEA-------KLAQWVARMQASCDQV 56
            +A +   L K L   ++ DR R  +++    K  +E+       ++A  +A+     +Q 
Sbjct: 15   KANSAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEIALDIAQSMMVVEQ- 73

Query: 57   LARKASLPVIRYDDNLPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQ 116
              RK  +P I Y   LP++ KRD+I  A+  HQV+I+AGETGSGKTTQLPKIC E+GRG+
Sbjct: 74   --RKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQLPKICAELGRGK 131

Query: 117  HGLIGHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAE 176
            +GLIGHTQPRR+AARSVA+R+AEE+ T LG  VGY+VRF DQ    T IKLMTDGILLAE
Sbjct: 132  YGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQIKLMTDGILLAE 191

Query: 177  TQNDRYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHF 236
             QNDR+L +YDTII+DEAHERSLNIDF+LGYLK LLPRRPDLKVIITSATID ERFSKHF
Sbjct: 192  IQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSKHF 251

Query: 237  DDAPIVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRS 296
             +API+EVSGRT+PVE  YRPL  + D E +R  D L   + I   +DE+          
Sbjct: 252  SNAPIIEVSGRTYPVEVRYRPLAGDDDSESDR--DQL---EGIFQAVDELCD------EG 300

Query: 297  PGDVLVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATN 356
             GD+L+F+ GEREIRD A+ L K  L+ TEI+PLYARLS  EQ +IFQ H GRR+VLATN
Sbjct: 301  LGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATN 360

Query: 357  VAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICV 416
            VAETSLTVPGI+YVID GTARISRYSYR KVQRLPIE ISQASANQRKGRCGR E GIC+
Sbjct: 361  VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICI 420

Query: 417  RLYSEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLL 476
            RLYSEEDFL RPEFTDPEILRTNLA+VILQM  L LG+I  FPF+E PD + I DG  LL
Sbjct: 421  RLYSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLL 480

Query: 477  QELSAV-----DRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQD 531
            +EL A+     D   +LT  G+QLARLP+DPR+ RM+LEA+KLG L+EV+I+ASA+SIQD
Sbjct: 481  EELGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQD 540

Query: 532  PRERPPERQQAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYL 591
            PRERP ++QQ+AD  H ++   DSDF  LVNLW    +Q++ALT++  R  C+ ++LNYL
Sbjct: 541  PRERPSDKQQSADDKHRRFNHEDSDFLTLVNLWHYIGQQQKALTSNQFRRQCKLDYLNYL 600

Query: 592  RLREWRDSHRQLSLICRDMQLSLNKEPADYPKLHKAVLSGLLSQIGQKTEE-GDYLGARQ 650
            R+REW+D + QL    R+M   LN EP  Y  +H A+L GLLS IG K +E  +Y GAR 
Sbjct: 601  RVREWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARN 660

Query: 651  RRFWVHPSSGLGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHW 710
             RF + P+SGL KK+P+W+M+AELVET+KL+AR+VAKIEPDWIEPLA HL K+++ EPHW
Sbjct: 661  ARFNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLSKRSYSEPHW 720

Query: 711  EKKRGQVVAYEQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSKAKCLSAN 770
             KK   V+AYE++ L+G+ +V +R V+YG +DPV+SRE+FIR ALV G+ ++K      N
Sbjct: 721  SKKNAAVMAYEKVMLYGIPIVPKRLVNYGTIDPVLSREIFIRSALVEGDWETKHAFFKQN 780

Query: 771  TRLLEQLDELEAKARRRDILADEETLYAFYDARLPAEIHQTATFDSWYRINSQKDPQLLI 830
              LL +++ELE K+RRRDIL D+E L+ FYD R+  E+     FD+W++  S+K P LL 
Sbjct: 781  RALLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLS 840

Query: 831  MREEDVLAREASEVTAAHYPDTLRVGDLTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPE 890
              +E +   +AS +T   YP+    G+L L LSY FEP    DGVT+ +P P+L  + P 
Sbjct: 841  FEKEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPH 900

Query: 891  RLEWLVPGVIEAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQALGRELLR 950
              +W +PG+     ++L+++LPK LRKNFVP P++  A L R+T  E  L  A+ +EL R
Sbjct: 901  GFDWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARVTPFEMPLLDAMEKELRR 960

Query: 951  MTGARVSDEAWAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALA-V 1009
            MTG  V  E W     Q+ +HL++    VD + + L E  DL EL     E  Q  L+ V
Sbjct: 961  MTGVTVLREDW--KLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQV 1018

Query: 1010 PQTAKSQAPVEAKIFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEFQHR 1069
                  Q  +    F  + +  QQK  G  +  YPALV++   V+   F T  E     R
Sbjct: 1019 ADDDIEQRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLSAMR 1078

Query: 1070 RALQRLLMQQLAESAKFLRGKLPGLTELGLLYRELGRIDSLVEDILLASLDSCVLEGEAS 1129
               +RL++  +    K+L   LP  ++LGL +   G++  L++D +   +D  ++E    
Sbjct: 1079 AGQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDK-LIEERGG 1137

Query: 1130 LPRDGAALASLAERKRGGWTEHAERLAKLTLDILKLWHGLQKRFKGKIDLAQAVALNDIK 1189
            +  +  A  +L E  R    +    +AK    IL   + + KR KGK+D   A AL+D+K
Sbjct: 1138 MVWEPQAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVK 1197

Query: 1190 QQLSHLVYPGFVRETPHQWLKELPRYLKAIEQRFEKLGSQVQKDRVWSGELSNLWAQYQA 1249
             Q+  L++ GF  E   + L ++ RY++AIE+R EKL     KDR+   ++ ++  +Y+ 
Sbjct: 1198 AQIEGLIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKE 1257

Query: 1250 RASKHAQEGKRDPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRL 1294
              +K  +       +   RW LEE RVS FAQQLGT  P+SDKR+
Sbjct: 1258 LLNKIPKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRI 1302