Pairwise Alignments

Query, 307 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N2E2

Subject, 297 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  122 bits (306), Expect = 1e-32
 Identities = 80/260 (30%), Positives = 128/260 (49%), Gaps = 4/260 (1%)

Query: 4   PRVTLDQWRTLQAVVDHGGFAQAAEVLHRSQSSVSYTVARMQDQLGVPLLRIDGRKAVLT 63
           P ++LD    L A+   G F+ AAE L R  S+++YTV +++  LGV L    G++A LT
Sbjct: 3   PAISLDGLIVLDAIDKKGSFSAAAESLFRVPSALTYTVQKLESDLGVKLFERKGQRAELT 62

Query: 64  EAGGVLLRRSRQLVKQASQLEDLAHHMEQGWEAEVRLVVDAAYPNARLVRALTAFMPQSR 123
             G ++LR+ R+++   S+LE+    +E GWE+ + L +D   P   L++ +  F    +
Sbjct: 63  LVGQLVLRQGREILAATSRLEEAVRQLETGWESTLTLAIDTVVPGLPLLKLIAEFTELGK 122

Query: 124 GCRVRLREEVLSGVEEVLLEGVADLA--ISGFSIPG-YLGAELSDVEFIAVAHPEHALHR 180
              + + EE L G  + L  G AD+A  ++G    G Y   E+  +EF+    P H L +
Sbjct: 123 QVTINITEESLGGGWDALYSGRADIAVGVTGELPKGQYHLVEIGMLEFVFALAPNHPLAQ 182

Query: 181 LNRELNFQDLESQLQVVIRDSGRQ-QPRDVGWLGAEQRWTVGSLATAASFVGSGLGFAWL 239
            +  +  + L     VV+ DS      R  G   + Q   V ++ T       GLG  +L
Sbjct: 183 FDHPIATEALLQFPSVVVADSSTALAQRSSGLFDSRQVIRVPNMQTKIKAQQLGLGVGYL 242

Query: 240 PRHMIERELKEGVLKRLPLE 259
           P+H+I   L  G L    LE
Sbjct: 243 PKHLIGEALAAGTLVACQLE 262