Pairwise Alignments

Query, 307 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N2E2

Subject, 302 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  234 bits (598), Expect = 1e-66
 Identities = 125/286 (43%), Positives = 178/286 (62%), Gaps = 1/286 (0%)

Query: 1   MKAPRVTLDQWRTLQAVVDHGGFAQAAEVLHRSQSSVSYTVARMQDQLGVPLLRIDGRKA 60
           M   + TL+QWR LQAVVD+GG+AQAAE L++SQSS+++ VA++Q QLG+ LL + GRKA
Sbjct: 1   MTRAKSTLEQWRILQAVVDYGGYAQAAEKLNKSQSSLNHAVAKLQHQLGIELLEVRGRKA 60

Query: 61  VLTEAGGVLLRRSRQLVKQASQLEDLAHHMEQGWEAEVRLVVDAAYPNARLVRALTAFMP 120
            LT  G VLLRRSR + +  ++LE LA ++EQGWE  + +  +  YP   LV AL+ F+P
Sbjct: 61  YLTTQGEVLLRRSRHVTQSVNELEQLASNLEQGWEPTLTIAREIVYPMDSLVCALSEFLP 120

Query: 121 QSRGCRVRLREEVLSGVEEVLLEGVADLAI-SGFSIPGYLGAELSDVEFIAVAHPEHALH 179
            SRG R+ + + V++G +E++L+  AD+AI +G    GYL   L + E   V HP H L 
Sbjct: 121 HSRGTRIIMLDSVITGTQELILQNKADIAICAGIPPKGYLPEPLCEQELYLVCHPSHPLA 180

Query: 180 RLNRELNFQDLESQLQVVIRDSGRQQPRDVGWLGAEQRWTVGSLATAASFVGSGLGFAWL 239
            +    + + L   LQ+VI+D+G Q   D+GWL AEQRWTV +   A   +  G+GF W+
Sbjct: 181 DMGILDDDKLLAQHLQLVIKDTGVQSNIDIGWLKAEQRWTVSNFHEAKVILNQGIGFCWI 240

Query: 240 PRHMIERELKEGVLKRLPLEQGGSRNSTFYLFSNKEKPLGPATQIL 285
           P  +I+ EL  G L RL L+    R     L        GPA+++L
Sbjct: 241 PSFLIQEELAAGKLVRLHLQGSQKRRIMLSLIIPNRDQQGPASKLL 286