Pairwise Alignments

Query, 307 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N2E2

Subject, 304 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  142 bits (359), Expect = 7e-39
 Identities = 90/288 (31%), Positives = 147/288 (51%), Gaps = 4/288 (1%)

Query: 5   RVTLDQWRTLQAVVDHGGFAQAAEVLHRSQSSVSYTVARMQDQLGVPLLRIDGRKAVLTE 64
           R+ +D +  LQ +V+ G FA+AAE LH++QS+VSY V ++++ LGV L   D  +A LT 
Sbjct: 2   RIDIDAFNVLQVLVEEGSFAKAAERLHKAQSAVSYQVKKLEEHLGVQLFSRDQYRAELTS 61

Query: 65  AGGVLLRRSRQLVKQASQLEDLAHHMEQGWEAEVRLVVDAAYPNARLVRALTAFMPQSRG 124
            G V+L   ++L++  + +E LA    +GWE ++ LV+D A P   ++ AL         
Sbjct: 62  EGRVILAEGQRLLQHLANIEHLASRFSEGWEPKLELVIDGALPMEPIMTALKRMAEHQIP 121

Query: 125 CRVRLREEVLSGVEEVLLEGVADLAI--SGFSIPGYLGAELSDVEFIAVAHPEHALHRLN 182
            +++L  E L GV+       ADL +     + P Y    L  +  + VA   H L  L 
Sbjct: 122 TKIQLNMEFLGGVQHRFERDNADLMLVKDYRTGPYYHPQPLPAITSVLVASALHPLASLK 181

Query: 183 RELNFQDLESQLQVVIRDSG-RQQPRDVGWLGAEQRWTVGSLATAASFVGSGLGFAWLPR 241
           R ++  +L+  +++ I DS   +  RD    G ++ + +       + +  GLGF WLP 
Sbjct: 182 R-ISLSELQQHVELTIEDSSPNKSYRDELQFGGDKVFYLSGFIMKKNALLKGLGFGWLPD 240

Query: 242 HMIERELKEGVLKRLPLEQGGSRNSTFYLFSNKEKPLGPATQILIELL 289
            +++ EL  G L  +    G     T  L S  E+PLG A ++  EL+
Sbjct: 241 FLVQEELLSGELVEIDFVGGSRYTFTPQLVSTLERPLGRAGKLFTELI 288