Pairwise Alignments

Query, 307 a.a., Transcriptional regulator, LysR family from Pseudomonas fluorescens FW300-N2E2

Subject, 298 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  118 bits (296), Expect = 1e-31
 Identities = 83/291 (28%), Positives = 144/291 (49%), Gaps = 8/291 (2%)

Query: 6   VTLDQWRTLQAVVDHGGFAQAAEVLHRSQSSVSYTVARMQDQLGVPLLRIDGRKAVLTEA 65
           +TL+Q      V   G    A++ LH++Q ++S ++ +++ QL V L    G +  LT+ 
Sbjct: 1   MTLEQLLMFNTVALAGSLKAASDKLHKTQPAISQSIKQLESQLDVVLFDRQGYRLALTQE 60

Query: 66  GGVLLRRSRQLVKQASQLEDLAHHMEQGWEAEVRLVVDAAYPNARLVRALTAFMPQSRGC 125
           G  LL+ +++++ +A ++  +A H+  G EA + L  +A++  AR++  L     +    
Sbjct: 61  GRKLLQYAQRVLNEAQEMRQVAKHLAIGNEASITLAFEASFNLARILPMLERTQLEFPHT 120

Query: 126 RVRLREEVLSGVEEVLLEGVADLAISGFSIPGYLGAE-----LSDVEFIAVAHPEHALHR 180
           ++ L++E L+G  E L +G AD+AIS   I            L     + VA P   L R
Sbjct: 121 QIILKQEYLTGALEALNQGKADIAISAGGIESMRSNHFELGFLFSGSLLDVASP-RLLSR 179

Query: 181 LNRELNFQDLESQLQVVIRDSGRQQPR-DVGWLGAEQRWTVGSLATAASFVGSGLGFAWL 239
                + ++L ++ Q+VI+D+G      + G    ++RW V    T    + SG+G+  L
Sbjct: 180 YPSLSHVKELVNEYQIVIQDTGTGTANIEFGVQAGQRRWYVNDFYTKKMLIQSGMGWGKL 239

Query: 240 PRHMIERELKEGVLKRLPL-EQGGSRNSTFYLFSNKEKPLGPATQILIELL 289
           P +M+E  L  G L  L L E+       +Y+    + PLGP  Q L E L
Sbjct: 240 PYYMVEEALANGSLHPLELKERQNLIQLDYYVMRRPQSPLGPVAQALWENL 290