Pairwise Alignments

Query, 288 a.a., hypothetical protein from Pseudomonas fluorescens FW300-N2E2

Subject, 290 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  103 bits (256), Expect = 6e-27
 Identities = 64/277 (23%), Positives = 133/277 (48%), Gaps = 2/277 (0%)

Query: 5   LTRTAMFIALLLTLTACSRIGLAYRNLDLIIPWTLNDYLDIRGEQKDWFNERLKDHLTWH 64
           + +T + + +LL L+ACS    +Y  LD  I W L+DY+ +   Q+   ++ ++  + WH
Sbjct: 1   MKKTMLLLVMLLGLSACST-KFSYHFLDWAIGWELDDYVTLNKTQQKSMDKLIEKFVLWH 59

Query: 65  CTTQLPDYLDWLDRLKTMVKTDQVTDEALQQRTQEAKAAIAETARQITPSAIELLQGLND 124
            + +L  Y+  L  ++ +++T+ +T     +    AK           P  + ++  L +
Sbjct: 60  QSEELTHYVAQLTEVEHLIQTNTLTPALWAEHVTLAKRHWFRLFEFALPDMLPIIGSLTE 119

Query: 125 DQVDDMDAAFVKDQRKRQQQYLKPTLQQQIQERSDRMVKRLDDWLGPLNEAQHQRVMAWS 184
            QV  + A   KD+++  +++   T +Q  Q+  D + ++ +DWLG +++ Q Q +  ++
Sbjct: 120 AQVKQILAQSRKDEQELIKEFAGKTPEQLQQDADDNLNEQFNDWLGSVSDEQKQLIHQYN 179

Query: 185 TALGDQNQQWIANRAHWQNQFSEAVAQRHS-PDFPKRIEQLLVNRESLWTPAYREAFSKT 243
                    W+  R  W  QF  A+ QR   P   +R+  L+   + L +  +R    + 
Sbjct: 180 QQRLSTLDMWLDYRHEWLRQFEIALGQRSDIPLLTERLTLLMTQPDELKSEKHRAILRQN 239

Query: 244 EAQARSLLVDLMAESTPPQRERLLKKIDGVKKDFTDL 280
                +LL+ + A  +P Q +   KK++ + +D  +L
Sbjct: 240 TEAFGALLLAINASLSPKQSKHFYKKLNKLIQDLREL 276