Pairwise Alignments

Query, 708 a.a., ATP-dependent DNA helicase RecQ from Pseudomonas fluorescens FW300-N2E2

Subject, 679 a.a., ATP-dependent DNA helicase RecQ (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  538 bits (1386), Expect = e-157
 Identities = 282/602 (46%), Positives = 374/602 (62%), Gaps = 6/602 (0%)

Query: 2   LEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRNGLAV 61
           +  A  +L  +FG+  FR  Q  +++ V +G D L +MPTGGGKSLCFQ+PAL R GL V
Sbjct: 1   MPSADTILSSVFGFSEFRPGQEEVVDAVCAGEDVLAIMPTGGGKSLCFQLPALAREGLTV 60

Query: 62  VVSPLIALMDDQVATLEELGVAAASLNSTLSAEQQRDLATRIRRGEVKMLYLAPERLVQP 121
           V+SPLIALM DQV  L E GVAA +L S  + E+   +   +  G +K+LY+APERL   
Sbjct: 61  VISPLIALMRDQVRGLREAGVAAGALTSGNTPEETDAVFEALEDGSLKILYMAPERLAHG 120

Query: 122 RMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPDVPRIALTATADKRTR 181
             +  L    + L A+DEAHCVSQWGHDFR +YL++G L     DVP  A TATAD  TR
Sbjct: 121 GTVRLLSRAGVGLLAVDEAHCVSQWGHDFRPDYLRIGDLRRAL-DVPVAAFTATADAETR 179

Query: 182 EEIVERLHLQDAER-FLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK 240
           +EI+ RL    A R FL  FDRPNI      K+ PR+Q+L F   R+  +GIVYC +R K
Sbjct: 180 DEIIARLFPDTAPRVFLRGFDRPNIHLAFAAKDSPRRQILDFAGARKGQSGIVYCGTRAK 239

Query: 241 VDEVAAFLCEQGFPALPYHAGLPNDLRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV 300
            + +A  L E G  A  YH G+  + R   + RF  E+ LI+VAT+AFGMG+DKP++R+V
Sbjct: 240 TEGLAQALREAGHMACHYHGGMEAEDRRIVETRFQREDSLIVVATVAFGMGVDKPDIRWV 299

Query: 301 AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVVMLKQMLQSSEGDERHKRLEQHK 360
           AH DLPKS+EAYYQE GRAGRDG PA+    +G  D+ + +  +         K  +  +
Sbjct: 300 AHADLPKSIEAYYQEIGRAGRDGAPAETLTLFGPDDIRLRRSQIDEGLAPPERKGADHGR 359

Query: 361 LDAMLSLCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVETWDATEPARQALSAIFRTG 420
           L+A+L L E  RCRRQ LL+YF ED    CG+CD C    E +D T+  R+ALSA+ RTG
Sbjct: 360 LNALLGLAEALRCRRQVLLSYFGED-SAACGNCDLCDTAPEVFDGTDAVRKALSAVLRTG 418

Query: 421 QRYGVGHLVDVLLGKDNEKVRSFGHQHLSVFGVGKARTESEWRSLFRQLVARGLADIDLE 480
           + +G GHL+D+L G   +KVR  GH+ L  FGVG+   +  W+ +FRQ++   L   D  
Sbjct: 419 ESFGAGHLIDILTGNATDKVRQRGHEDLPTFGVGRDLDKRTWQGVFRQMMGHDLLRPDAA 478

Query: 481 GYGGLRLSATCRPLLKGEVTLELRRDLKPATAVKSSKSQASQLVRGEERDQWEALRALRR 540
            +G L ++   RPLL+GE T+ELRRD     A    +     LV  E+     AL+A RR
Sbjct: 479 RHGALVMTDAARPLLRGETTIELRRDTLRKAA---HRPAVRALVSDEDAPLLSALKAKRR 535

Query: 541 KLAEEHGVPPYVIFPDSTLLEMLRSQPTSLAEMARVSGVGARKLERYGEAFLQVLGGEAE 600
            LAE  GVP YVIF D +L+EM   +P +L   A +SGVGA+KLE+YG AFL+V+ G+  
Sbjct: 536 ALAEAAGVPAYVIFTDRSLIEMAERRPDTLDAFAGISGVGAKKLEKYGAAFLEVIAGDRP 595

Query: 601 AP 602
            P
Sbjct: 596 TP 597



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)

Query: 497 GEVTLELRRDLKPATAVKSSKSQASQLVRGEERDQWEALRALRRKLAEEHGVPPYVIFPD 556
           G   LE+    +P  A  + +  A +          EA  AL R  A   G    +    
Sbjct: 583 GAAFLEVIAGDRPTPAHPARRKLAGRAAGSTYDRLLEAQAALLRGAA---GTDKPLSCSA 639

Query: 557 STLLEMLRSQPTSLAEMARVSGVGARKLERYGEAFLQVL 595
           + L  +  ++P    +M R+  +G R+ ER+G AFL+VL
Sbjct: 640 AILSRVAETRPRDEDDMVRI--LGDRRAERFGAAFLEVL 676